PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_9558C4E24.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | DBB | ||||||||
Protein Properties | Length: 265aa MW: 27952.1 Da PI: 6.1519 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.3 | 2.7e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +e + ++ fC ++ lC+ C H+ H++ Traes_2BL_9558C4E24.2 4 QCDVCEAEAASVFCCADEAALCDACDRRVHRAdklagkHRRL 45 7*****************************778888888765 PP | |||||||
2 | zf-B_box | 26.3 | 1.6e-08 | 62 | 94 | 2 | 34 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34 +++ C+ ++ek+ lfC++++ lC++C ++ H Traes_2BL_9558C4E24.2 62 KPPLCDICQEKRGFLFCKEDRAILCRECDVQVH 94 7899**************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.7E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.367 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.57E-7 | 3 | 44 | No hit | No description |
Pfam | PF00643 | 4.0E-6 | 4 | 46 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.741 | 61 | 108 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.9E-14 | 61 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.6E-7 | 62 | 103 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.20E-8 | 66 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MKVQCDVCEA EAASVFCCAD EAALCDACDR RVHRADKLAG KHRRLSLLHP SPSSPSSSPS 60 SKPPLCDICQ EKRGFLFCKE DRAILCRECD VQVHTVSELT RRHGRFLLTG VRVSSAPAES 120 PAPSGQEEAE GNSTSPCNAD SCSGDASGTA SASATASDGS SISEYLTKTL PGWHVEDFLL 180 DDAAASAAVT VSSNKPYQQV GLARIGGPQE GYPAWAGQEQ LIGGVVVAAG ERASRELWVP 240 QMHAGAAWTG SKRPRPSSLG SSSYW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 251 | 255 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168036.1 | 1e-148 | B-box zinc finger protein 20-like isoform X2 | ||||
Swissprot | Q9LQZ7 | 1e-51 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A3B6CCS2 | 0.0 | A0A3B6CCS2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_9558C4E24.2 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_2BL_F35AEBED4.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 3e-27 | DBB family protein |