PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_8BEA9CE1B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | YABBY | ||||||||
Protein Properties | Length: 269aa MW: 28986.8 Da PI: 7.2221 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 201.9 | 2.6e-62 | 28 | 220 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkee................. 70 eq+Cyv+CnfC+tilav vP +slfk+v+vrCGhC++llsvnl++ ++l+ + + Traes_2BL_8BEA9CE1B.1 28 AEQEQLCYVHCNFCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRNLLlpataNQLPFSP--------Sllsptspasphglldem 107 6789*****************************************99876333333333333........233335556888988888 PP YABBY 71 ........lleelkveeenlksnvekeesastsvssekl......senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasn 144 l +++ + + + + +++++a ++ +++++ + e ++ + + + PekrqrvPsaynrfik+eiqrika+n Traes_2BL_8BEA9CE1B.1 108 ssfqapssL-LTDQASPNVSSITSSSNSCAINTPAMSMMpppekpAQREPQQRKSAASGTKHPEKRQRVPSAYNRFIKDEIQRIKANN 194 888766632.23333333333334444455555555566888665333333444455679**************************** PP YABBY 145 PdishreafsaaaknWahfPkihfgl 170 Pdi+hreafsaaaknWahfP+ihfgl Traes_2BL_8BEA9CE1B.1 195 PDITHREAFSAAAKNWAHFPHIHFGL 220 ************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.7E-69 | 29 | 220 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.62E-8 | 162 | 213 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.8E-5 | 166 | 214 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MMSSPAESET SFFPDHLAEQ QQQQPPFAEQ EQLCYVHCNF CDTILAVGVP CSSLFKTVAV 60 RCGHCANLLS VNLRNLLLPA TANQLPFSPS LLSPTSPASP HGLLDEMSSF QAPSSLLTDQ 120 ASPNVSSITS SSNSCAINTP AMSMMPPPEK PAQREPQQRK SAASGTKHPE KRQRVPSAYN 180 RFIKDEIQRI KANNPDITHR EAFSAAAKNW AHFPHIHFGL MPDQGLMRKT SIQSQLDGAG 240 DCMLFKDSLY AAAAAAAATA ASSMGATPF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376350 | 0.0 | AK376350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3121I03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167170.1 | 1e-178 | protein YABBY 5-like | ||||
Swissprot | Q01JG2 | 1e-125 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 1e-125 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A446MJG4 | 0.0 | A0A446MJG4_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_8BEA9CE1B.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 3e-49 | YABBY family protein |
Publications ? help Back to Top | |||
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