PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_8BEA9CE1B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 269aa    MW: 28986.8 Da    PI: 7.2221
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_8BEA9CE1B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY201.92.6e-62282205170
                  YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkee................. 70 
                               eq+Cyv+CnfC+tilav vP +slfk+v+vrCGhC++llsvnl++       ++l+ +         +                 
  Traes_2BL_8BEA9CE1B.1  28 AEQEQLCYVHCNFCDTILAVGVPCSSLFKTVAVRCGHCANLLSVNLRNLLlpataNQLPFSP--------Sllsptspasphglldem 107
                            6789*****************************************99876333333333333........233335556888988888 PP

                  YABBY  71 ........lleelkveeenlksnvekeesastsvssekl......senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasn 144
                                    l  +++ + +  + + +++++a ++ +++++       + e ++ + +    + PekrqrvPsaynrfik+eiqrika+n
  Traes_2BL_8BEA9CE1B.1 108 ssfqapssL-LTDQASPNVSSITSSSNSCAINTPAMSMMpppekpAQREPQQRKSAASGTKHPEKRQRVPSAYNRFIKDEIQRIKANN 194
                            888766632.23333333333334444455555555566888665333333444455679**************************** PP

                  YABBY 145 PdishreafsaaaknWahfPkihfgl 170
                            Pdi+hreafsaaaknWahfP+ihfgl
  Traes_2BL_8BEA9CE1B.1 195 PDITHREAFSAAAKNWAHFPHIHFGL 220
                            ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.7E-6929220IPR006780YABBY protein
SuperFamilySSF470952.62E-8162213IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.8E-5166214IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMSSPAESET SFFPDHLAEQ QQQQPPFAEQ EQLCYVHCNF CDTILAVGVP CSSLFKTVAV  60
RCGHCANLLS VNLRNLLLPA TANQLPFSPS LLSPTSPASP HGLLDEMSSF QAPSSLLTDQ  120
ASPNVSSITS SSNSCAINTP AMSMMPPPEK PAQREPQQRK SAASGTKHPE KRQRVPSAYN  180
RFIKDEIQRI KANNPDITHR EAFSAAAKNW AHFPHIHFGL MPDQGLMRKT SIQSQLDGAG  240
DCMLFKDSLY AAAAAAAATA ASSMGATPF
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763500.0AK376350.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3121I03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167170.11e-178protein YABBY 5-like
SwissprotQ01JG21e-125YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF01e-125YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A446MJG40.0A0A446MJG4_TRITD; Uncharacterized protein
STRINGTraes_2BL_8BEA9CE1B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-49YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]