PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_88A78A71E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 416aa    MW: 44170.2 Da    PI: 9.5141
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_88A78A71E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS197.58e-61414142374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn......sseelaalk 82 
                            ++lL  cA av++++l+++q+l   l ela+ +gd+++Rlaay ++AL+ rl    ++  ++a+++ ++ e+        + +l+   
  Traes_2BL_88A78A71E.1  41 EQLLGPCAVAVEARNLSRVQHLFYVLGELAAFSGDANHRLAAYGLRALSLRLPAaVGPAAAAAVRVPAACESPtpsfagAEPRLFR-- 126
                            689999**********************************************9956677777775544443333445542222222.. PP

                   GRAS  83 l....fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleet 161
                            +    f+evsP++++ + +aN aI + ++ + + +H +D++is+G+QWp+Ll++L+  +  + pps+R+T+v+ p      +      
  Traes_2BL_88A78A71E.1 127 AslikFHEVSPWFTLPNTLANAAISQLASAApRPLHLVDIGISHGVQWPTLLESLTRMAagRAPPSVRLTVVATPPVPfsASPPGYDF 214
                            13479***********************9997889********************9888667799********976557888899999 PP

                   GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                               L ++A+++++++e++     + +    + L + p+Eal+V+l+++l ++       ++er+++++ vk+l+P++vv++e ++  n
  Traes_2BL_88A78A71E.1 215 SPHLLRYAKSIKLDLEISR----AASLDPAHGLCTTPDEALVVCLQFRLGHVT------AEERTDIIRRVKGLKPHLVVLSELDVGGN 292
                            9****************98....344445588999**************9997......445889*******************9987 PP

                   GRAS 250 sesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                            ++  + +f+  le  + +++s++a +   + e+r+ +E+e     +  +va + a+   +    e Wr+r+++aGF++v+++ +a+++
  Traes_2BL_88A78A71E.1 293 GS-AAGEFTARLELLWRFLESTHAAFKGRDgEDRRLLEAE-----AGTAVAVAAAR---EAMGREGWRDRMTAAGFEQVAFGGEAVES 371
                            65.5999***************888744443555555555.....66666666665...3345789********************** PP

                   GRAS 337 aklllrkvksdgyrveee......sgslvlgWkdrpLvsvSaWr 374
                            a++llrk++ +g+++          g++ l Wk++p+ ++S Wr
  Traes_2BL_88A78A71E.1 372 ARSLLRKYD-NGWEMSTAaaatggGGAVALRWKGQPVSFCSLWR 414
                            *********.5555553334666566666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.38114389IPR005202Transcription factor GRAS
PfamPF035142.8E-5841414IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MVSGSGHSSS NNQRRRTEQD RPGGGKKGGG AGSDRDARWA EQLLGPCAVA VEARNLSRVQ  60
HLFYVLGELA AFSGDANHRL AAYGLRALSL RLPAAVGPAA AAAVRVPAAC ESPTPSFAGA  120
EPRLFRASLI KFHEVSPWFT LPNTLANAAI SQLASAAPRP LHLVDIGISH GVQWPTLLES  180
LTRMAAGRAP PSVRLTVVAT PPVPFSASPP GYDFSPHLLR YAKSIKLDLE ISRAASLDPA  240
HGLCTTPDEA LVVCLQFRLG HVTAEERTDI IRRVKGLKPH LVVLSELDVG GNGSAAGEFT  300
ARLELLWRFL ESTHAAFKGR DGEDRRLLEA EAGTAVAVAA AREAMGREGW RDRMTAAGFE  360
QVAFGGEAVE SARSLLRKYD NGWEMSTAAA ATGGGGAVAL RWKGQPVSFC SLWRPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-303641529420Protein SHORT-ROOT
5b3h_E3e-303641529420Protein SHORT-ROOT
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12329GGKKGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167481.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A3B6CFA10.0A0A3B6CFA1_WHEAT; Uncharacterized protein
STRINGTraes_2BL_88A78A71E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.12e-95GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]