PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_84018B863.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 660aa    MW: 77091.7 Da    PI: 8.9488
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_84018B863.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.23.7e-2056139390
                   FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                            Y eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCka+++vk +  +++wev  +eleHnH++
  Traes_2BL_84018B863.1  56 YLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKYNAsENHWEVVFVELEHNHPC 138
                            99*************99988..9999**************99887...8999*****************99***************97 PP

                   FAR1  90 a 90 
                            +
  Traes_2BL_84018B863.1 139 N 139
                            6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-1856139IPR004330FAR1 DNA binding domain
PfamPF105511.5E-23263356IPR018289MULE transposase domain
PfamPF044341.3E-6544576IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.644544580IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-4555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MDSLQSDPYT RSSLQMQLID TSTSFETSNL DLVKHEVPTP QVGMTFETVD LAYQSYLEYG  60
YRAGFGVSKR TSHSVDGVKY RATFVCYKGG IARIKPGLKA RRRLVAKTGC KAMMVVKYNA  120
SENHWEVVFV ELEHNHPCNP EMVRFMMCFK DLPDWQREHR PFNAKTRLNP KIHSGRGRPP  180
NQNKDFMVRS FSQSNYSIEA AAKCGKLRFA EGDVEALLIF FDKMQAQNSN FFYNWDMDDE  240
GRLKNVCWVD ARSRAAYQHF SDVVCFDTVY LTYQFVIPLV AFLGINHHGQ FVLLGCGLLG  300
DESPETFSWL FKKWLKCMND KAPEAIITTH SRPVVKAVSE VFLNTRHRYN LWHIMKELPD  360
MSGRVEDKEA ISLRMKKVVY DTITAADFEK EWVEMANQYN LHDNRWLTTL FEERAKWVPA  420
YVKDAFWAGI STVRRSERLE AFFDGYITPE TTIKIFIEQF DTAMKLRSDR EAYDDFRSFQ  480
QRPQALSGLL FEEQFANAYT INIFQKFQDQ LKQLMNVTCT EVSRNGSIVT YTVTVIGKER  540
KFDYRVMYNG AEKEVWCICR SFQFKGILCS HALAVLKQEL VMLIPSKYIL DRWRKDYKCP  600
ENLRKLPSNQ KRQNQQGRAQ NLKMSVMIKW TTSTTMATST LLTLWKWEQL ILMQWSMFCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619440.0AK361944.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160302.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_020183256.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLW5BVD70.0W5BVD7_WHEAT; Uncharacterized protein
STRINGTraes_2BL_84018B863.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-109FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]