PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_83EDE2CBB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Trihelix | ||||||||
Protein Properties | Length: 500aa MW: 53617.3 Da PI: 8.062 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 55 | 2.1e-17 | 114 | 201 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +Wt+ + L++a+ ++ e+l+rg+l++ +We+v++++ + +s +qCk+k++nl+kryk + ++ + s s+s +p+++q Traes_2BL_83EDE2CBB.1 114 EWTDGAISSLLDAYMDRFEQLNRGNLRGRDWEDVAAAVtdgqGKSSGGKSVEQCKNKIDNLKKRYKVECQRIAG--SASVSLWPWYKQ 199 5*************************************6655344446899***************88888877..578889****** PP trihelix 85 le 86 +e Traes_2BL_83EDE2CBB.1 200 ME 201 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 8.0E-20 | 112 | 203 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 1.7E-69 | 255 | 493 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 1.13E-50 | 258 | 493 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 32.329 | 258 | 494 | IPR015963 | Uridylate kinase, bacteria |
Pfam | PF00696 | 9.7E-16 | 261 | 473 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 1.37E-110 | 261 | 494 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0046939 | Biological Process | nucleotide phosphorylation | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MASCDGDFGL LGDDAHPAPQ PSAQPGPPQQ AQGFCFVEAS AAGSGAGPFA PAREEGNHSS 60 DRGKASHHTK RRRDRPEEFS DGGEYCSYIS GGSGGGRKGR GGGVSSDYRK DREEWTDGAI 120 SSLLDAYMDR FEQLNRGNLR GRDWEDVAAA VTDGQGKSSG GKSVEQCKNK IDNLKKRYKV 180 ECQRIAGSAS VSLWPWYKQM EQIMGNSPSP GTPKPPPATN DEKPRQQQQH SNKRYPSSGT 240 GHATTMVPYS RSTPLSNPKW KRVLLKIGGT ALAGEAPHNV DPKVIMLIAR EVQVACRHGV 300 EVAILMGGRN VFCADSWVAA TGTDRASTHP IGMMAAVMNA VLLQASLEKI GVETRVQTAL 360 MMQEVAEPYI RRRAIRHLEK GRVVIFGGTG AGTGNPLFTT DTAAALRASE INADVVLKGV 420 IGDDEYGCPP RSNGSAPFEH ISFRELAARG TSKMDMTAIT CCEENNIPVV IFNMLEPGNM 480 SRAICGDQVG TLVDQSGRIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 1e-61 | 252 | 493 | 1 | 239 | Uridylate kinase |
3ek5_B | 1e-61 | 252 | 493 | 1 | 239 | Uridylate kinase |
3ek5_C | 1e-61 | 252 | 493 | 1 | 239 | Uridylate kinase |
3ek5_D | 1e-61 | 252 | 493 | 1 | 239 | Uridylate kinase |
3ek5_E | 1e-61 | 252 | 493 | 1 | 239 | Uridylate kinase |
3ek5_F | 1e-61 | 252 | 493 | 1 | 239 | Uridylate kinase |
3ek6_A | 1e-61 | 252 | 493 | 1 | 239 | Uridylate kinase |
3ek6_B | 1e-61 | 252 | 493 | 1 | 239 | Uridylate kinase |
3ek6_C | 1e-61 | 252 | 493 | 1 | 239 | Uridylate kinase |
3ek6_D | 1e-61 | 252 | 493 | 1 | 239 | Uridylate kinase |
3ek6_E | 1e-61 | 252 | 493 | 1 | 239 | Uridylate kinase |
3ek6_F | 1e-61 | 252 | 493 | 1 | 239 | Uridylate kinase |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 102 | GGRKGRGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369935 | 0.0 | AK369935.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101G10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159183.1 | 0.0 | uncharacterized protein LOC109744472 | ||||
TrEMBL | A0A3B6C6Z3 | 0.0 | A0A3B6C6Z3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_83EDE2CBB.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1935 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 1e-150 | Trihelix family protein |
Publications ? help Back to Top | |||
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