PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_6AEE8AC28.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 354aa    MW: 38022.6 Da    PI: 7.1606
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_6AEE8AC28.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.33.6e-54131381128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeel+++yL+kkv++ ++ +  +++ +d++k+ePwdLp+ ++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgk
  Traes_2BL_6AEE8AC28.1  13 LPPGFRFHPTDEELITHYLAKKVADARFAA-LAVSVADLNKCEPWDLPSLARMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGK 99 
                            79*************************999.569999***********8778899********************************* PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk++++ +++lvg+kktLvfy+grapkg k+ Wvmheyrl
  Traes_2BL_6AEE8AC28.1 100 DKDIFR-GKALVGMKKTLVFYTGRAPKGDKSGWVMHEYRL 138
                            ******.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-639172IPR003441NAC domain
PROSITE profilePS5100558.01813172IPR003441NAC domain
PfamPF023659.0E-3014138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEHGEQEQHA MDLPPGFRFH PTDEELITHY LAKKVADARF AALAVSVADL NKCEPWDLPS  60
LARMGEKEWY FFCLKDRKYP TGLRTNRATE SGYWKATGKD KDIFRGKALV GMKKTLVFYT  120
GRAPKGDKSG WVMHEYRLNA KLHAASTSRG SLSGGRAASS KNEWVLCRVF KKSLVGGVVS  180
SAPASSAAKK GGVGMIEEIG SSVADVTPLP PLLDMSGSGA SFVDPAAHVT CFSNNALEAG  240
QFFNPTATGG CATDADHHGL ASSYSPLASF TQYGGQLHHG VSLSLVQLLE SSGYHRGLAD  300
DMAPCGNQQQ PAACKGERER LSASQDTGLT SDVNPEISSS FGQTFDHEPA PWGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-521117315166NO APICAL MERISTEM PROTEIN
1ut4_B4e-521117315166NO APICAL MERISTEM PROTEIN
1ut7_A4e-521117315166NO APICAL MERISTEM PROTEIN
1ut7_B4e-521117315166NO APICAL MERISTEM PROTEIN
3swm_A6e-521117318169NAC domain-containing protein 19
3swm_B6e-521117318169NAC domain-containing protein 19
3swm_C6e-521117318169NAC domain-containing protein 19
3swm_D6e-521117318169NAC domain-containing protein 19
3swp_A6e-521117318169NAC domain-containing protein 19
3swp_B6e-521117318169NAC domain-containing protein 19
3swp_C6e-521117318169NAC domain-containing protein 19
3swp_D6e-521117318169NAC domain-containing protein 19
4dul_A4e-521117315166NAC domain-containing protein 19
4dul_B4e-521117315166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3639480.0AK363948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2020E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168413.10.0NAC domain-containing protein 92-like
TrEMBLA0A3B6C8A00.0A0A3B6C8A0_WHEAT; Uncharacterized protein
TrEMBLA0A446MF840.0A0A446MF84_TRITD; Uncharacterized protein
STRINGTraes_2BL_6AEE8AC28.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.15e-87NAC domain containing protein 100
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]