![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2BL_69E6AB6D1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 206aa MW: 22283.2 Da PI: 10.4584 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.2 | 7.2e-41 | 101 | 177 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC++ l+ akeyhrrhkvCe+hskap v+v+g eqrfCqqCsrfh++ efD++krsCrrrLa+hnerrrk++ Traes_2BL_69E6AB6D1.2 101 RCQVEGCHMVLAGAKEYHRRHKVCEAHSKAPRVIVHGAEQRFCQQCSRFHAMAEFDDAKRSCRRRLAGHNERRRKSN 177 6**************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.9E-35 | 96 | 163 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.171 | 99 | 176 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.18E-38 | 100 | 179 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.6E-32 | 102 | 175 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MEGDGNARSR ATLAWDLGVQ WAPAASAAYP QHFLPPPGVA SQQQHMQQEL TSLKLGKRPS 60 NLAGGQVAQM DGSGVGGGRA VVEGKRKEKA AGATATAAMP RCQVEGCHMV LAGAKEYHRR 120 HKVCEAHSKA PRVIVHGAEQ RFCQQCSRFH AMAEFDDAKR SCRRRLAGHN ERRRKSNASD 180 AMARGSAHAH GNPCHYSHTS IYLARA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-32 | 92 | 175 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU964656 | 1e-96 | EU964656.1 Zea mays clone 280651 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169596.1 | 1e-114 | squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q01JD1 | 1e-64 | SPL7_ORYSI; Squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q7XT42 | 1e-64 | SPL7_ORYSJ; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A3B6CBA1 | 1e-134 | A0A3B6CBA1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_69E6AB6D1.2 | 1e-150 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10303 | 34 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43270.3 | 1e-37 | squamosa promoter binding protein-like 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|