PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_41168D652.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 494aa    MW: 51660.8 Da    PI: 9.2068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_41168D652.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.9e-06249272123
                            EEETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                            ++CpdCg +F r ++L+ H++t H
  Traes_2BL_41168D652.2 249 FPCPDCGDVFVRAESLHLHQSTrH 272
                            89*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.118249277IPR007087Zinc finger, C2H2
PROSITE patternPS000280251272IPR007087Zinc finger, C2H2
SuperFamilySSF563999.59E-17274493No hitNo description
Gene3DG3DSA:3.90.228.108.1E-5275393IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.109.4E-6418493IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MVEPNRSAGS KSSTTTTTVR KKKLAATSPA TPKPDKEKLP DGGKKHQSSH GSSATAAAAD  60
SPSYRLALRS LFSCRNSHAA QHQHNQRAAP PQPAPAPADD ASSRRCKKKS KKQTQLGCSA  120
SICKLRDASP RRVTLHRPPA EEEPPSGAAT GAGEPCKRRA SVSGGGERRV KKPLQQPQHG  180
QGNEAAAAGA VVVGSSSRHW GSSTASSSSS TAGGGGGSSF RLRRLSGCYE CHMVVDPAGG  240
GSSMRAAIFP CPDCGDVFVR AESLHLHQST RHAVSELGPE DTSRNIIEII FQSSWLKKQT  300
PVCAVDRILK VHNAPATLAR FEAYRDAVKA RARGGRPGAG RCTADGNELL RFHCAALACS  360
LGAGGATHLC DAAGSSCAAC GIVRDGFKFR APGVRTMATS GRAHDDAVGG EEGEGGGERR  420
RAMLVCRVIA GRVKRRCEGT ADKEEAEASP SAEEEAEEEY DSVAGTAGVY SSLDELEVFN  480
PTAILPCFVV VYKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRCKKKSKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162022.10.0uncharacterized protein LOC109747356
TrEMBLA0A3B6CHM00.0A0A3B6CHM0_WHEAT; Uncharacterized protein
STRINGTraes_2BL_41168D652.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-66C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]