PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_3A3353970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 26835.2 Da PI: 7.2966 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52 | 1.7e-16 | 99 | 149 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr ++ +g+++AeIrd + ng +r++lg+fg++e Aa a+++a+ + +g Traes_2BL_3A3353970.1 99 DFIGVRTRP-WGKFAAEIRDSTRNG--ARVWLGTFGSPEAAAMAYDQAAFSARG 149 688***999.**********44465..**********************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.57E-13 | 98 | 158 | No hit | No description |
SMART | SM00380 | 8.2E-30 | 99 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.363 | 99 | 157 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-11 | 99 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-26 | 100 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-7 | 100 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-20 | 100 | 159 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.5E-7 | 123 | 139 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEQHFAVTSP PGSYYQHHRY AAAPSSDFDM SDMDDMAFLS TLLESTDRAS CSDPSLSSSS 60 SSSDMTGVGA AAPHVPVGSS SPKGRGHQAT AAMPIMAKDF IGVRTRPWGK FAAEIRDSTR 120 NGARVWLGTF GSPEAAAMAY DQAAFSARGD AAVLNFPVER VRESLRALAL GAVVGSPVLE 180 LKRRHRMRRR SPDKKPVKQP RVAAVKEDAR PATAGVVVLE DLGAEYLEEL LWVSEPPMDH 240 FHTTATSSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-23 | 98 | 159 | 1 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-23 | 97 | 158 | 3 | 64 | ATERF1 |
3gcc_A | 8e-23 | 97 | 158 | 3 | 64 | ATERF1 |
5wx9_A | 9e-23 | 100 | 159 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034174 | 7e-59 | BT034174.1 Zea mays full-length cDNA clone ZM_BFc0032N13 mRNA, complete cds. | |||
GenBank | JX469950 | 7e-59 | JX469950.1 Zea mays subsp. mays clone UT3211 AP2-EREBP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149047.1 | 1e-126 | ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 6e-45 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A3B6CD27 | 0.0 | A0A3B6CD27_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MQ67 | 0.0 | A0A446MQ67_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_3A3353970.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 7e-40 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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