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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_26A5F9082.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 96aa MW: 10863 Da PI: 10.6163 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 132.3 | 1.2e-41 | 28 | 96 | 3 | 70 |
S1FA 3 vakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 v ++e+ kGlnPG+ivllvv++ ll+f+vgny+ly yaqk+lPP+kkkPvskkklkreklkqGv++PGe Traes_2BL_26A5F9082.2 28 VIIEEVnKGLNPGMIVLLVVATTLLLFFVGNYALYLYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 96 5667778*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 4.0E-8 | 28 | 96 | No hit | No description |
Pfam | PF04689 | 7.1E-39 | 32 | 96 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MHLRLFCFHK SIYAIASDRS SLYLQNNVII EEVNKGLNPG MIVLLVVATT LLLFFVGNYA 60 LYLYAQKTLP PKKKKPVSKK KLKREKLKQG VSAPGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363114 | 1e-124 | AK363114.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2012N05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159184.1 | 3e-43 | DNA-binding protein S1FA2 | ||||
Refseq | XP_020159185.1 | 3e-43 | DNA-binding protein S1FA2 | ||||
Swissprot | Q7XLX6 | 7e-26 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A446MCN5 | 8e-63 | A0A446MCN5_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_26A5F9082.2 | 1e-63 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5154 | 35 | 63 |
Publications ? help Back to Top | |||
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