PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_209C14A8F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 37120.1 Da PI: 6.836 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.8 | 3.6e-52 | 10 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrFhPtdeel+ +yLkkk+ +k++l evi+evd++k+ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wka Traes_2BL_209C14A8F.1 10 VPPGFRFHPTDEELLLYYLKKKIGFEKFDL-EVIREVDLNKIEPWDLQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKA 96 69****************************.99**************963433332566***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tg+dk + + + +++g++ktLvfy+grap+g+k+dW+mheyrle Traes_2BL_209C14A8F.1 97 TGRDKCIRT-SYRKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLE 139 ********9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-59 | 6 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.388 | 10 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-27 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MADFSSSNGV PPGFRFHPTD EELLLYYLKK KIGFEKFDLE VIREVDLNKI EPWDLQERCR 60 IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR 120 GRAPHGQKSD WIMHEYRLEE IDEAQGGTSE DGWVVCRVFK KKCFFKIAGG GEGSSSQSAD 180 AGAGHMAVSS PLGGHDHADR AAMASHYMHG MHPQYHPQHA SSFYYSQMQP PEAAYSHHVQ 240 VQDLLTNHRP AADAAGGGYD FSGLPVEHPG LDVGSSDGVA ADGLAEGRDQ TNGAADQQWQ 300 PMDGFSNGGG AAAVQQMSAM NSGQRGGEMD LWGYGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-54 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-54 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-54 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-54 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-54 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-54 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-54 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-54 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-54 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-54 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-54 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-54 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-54 | 10 | 162 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-54 | 10 | 162 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971542 | 0.0 | EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155185.1 | 0.0 | protein BEARSKIN1 | ||||
Swissprot | Q9SV87 | 1e-109 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A446ME04 | 0.0 | A0A446ME04_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A453C268 | 0.0 | A0A453C268_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8CEM3 | 0.0 | M8CEM3_AEGTA; NAC domain-containing protein 12 | ||||
TrEMBL | W5B7L7 | 0.0 | W5B7L7_WHEAT; Uncharacterized protein | ||||
STRING | EMT21626 | 0.0 | (Aegilops tauschii) | ||||
STRING | Traes_2BL_209C14A8F.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9297 | 30 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 2e-91 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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