PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_0A51FACEC1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 309aa    MW: 32613.6 Da    PI: 7.8666
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_0A51FACEC1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087172194123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++Cp C+k+F++   L  H  +H
  Traes_2BL_0A51FACEC1.1 172 FQCPACKKVFRSYQALGGHRASH 194
                             89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.044426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078427IPR007087Zinc finger, C2H2
PfamPF138944.7E-4526No hitNo description
SuperFamilySSF576672.42E-7526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.42E-7167194No hitNo description
PfamPF139127.5E-11171194IPR007087Zinc finger, C2H2
SMARTSM003550.026172194IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286172194IPR007087Zinc finger, C2H2
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
PfamPF139129.6E-8234255IPR007087Zinc finger, C2H2
SMARTSM00355250234254IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAKNTCKLCC RRFASPRALA GHMRSHSIKV ARSQISSASS ASTSVAAGDD DAAADARMMP  60
IQAYVLRGKP KRRVRLAESD FSDRESEADY PSQSPDAKRV HGGSRDAEPV SSVSDAATPE  120
EDVALSLMML SRDSWPAAAW QPSSYRAADS DDGSDGGGEV EPRAAEQKRT RFQCPACKKV  180
FRSYQALGGH RASHVRGGRG GCCAPPLNPP PPPPASTHLQ PLLECEEGTK PHPHECPCCF  240
RVFASGQALG GHKRSQLCPG AAAVAAPGAD HPAAAMKSLG LIDLNLPAPF EDLEVSAVSD  300
PFLSARPGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874KPKRRVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194232.11e-153zinc finger protein ZAT1-like
TrEMBLA0A3B6CB420.0A0A3B6CB42_WHEAT; Uncharacterized protein
TrEMBLA0A446MLJ00.0A0A446MLJ0_TRITD; Uncharacterized protein
STRINGTraes_2BL_0A51FACEC1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.14e-32C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]