PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_C407071E4.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 571aa    MW: 62389.5 Da    PI: 7.1661
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_C407071E4.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31188245260
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                            dDgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +er+  d+ ++e++Y+g+Hnh+k
  Traes_2AS_C407071E4.2 188 DDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERAV-DGLITEVVYKGRHNHPK 245
                            8****************************************.***************85 PP
2WRKY107.46.9e-34361419159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++dpk v++tYeg+Hnhe
  Traes_2AS_C407071E4.2 361 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCPVRKHVERASHDPKSVITTYEGKHNHE 419
                            59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-27180246IPR003657WRKY domain
PROSITE profilePS5081123.525182246IPR003657WRKY domain
SuperFamilySSF1182902.09E-24186246IPR003657WRKY domain
SMARTSM007747.1E-35187245IPR003657WRKY domain
PfamPF031064.2E-24188244IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-38346421IPR003657WRKY domain
SuperFamilySSF1182901.1E-29353421IPR003657WRKY domain
PROSITE profilePS5081138.871356421IPR003657WRKY domain
SMARTSM007741.4E-39361420IPR003657WRKY domain
PfamPF031061.9E-26362419IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MQFAGCSVVV LPILRSQVFR GLKAWWTLKI VNKNFFQVEP SPTTGSLSMA AIMHKSAHPD  60
MPSPRDKSIR AHEDGGSRDF EFKPHLNSSS QSVAPAMSDL KKHEHSMQNQ SMNPSSSSSN  120
MVNENRPPCS RESSLTVNVS APNQPVGMVG LTDSMPAEVG TSEPQQMNSS DNAMQEPQSE  180
NVADKSADDG YNWRKYGQKH VKGSENPRSY YKCTHPNCEV KKLLERAVDG LITEVVYKGR  240
HNHPKPQPNR RLAGGAVPLN QGEERYDGAA AADDKSSNAL SNLANAVNSP GMVEPVPVSV  300
SDDDIDAGGG RSYPGDDGTE EEDLESKRRK MESAGIDAAL MGKPNREPRV VVQTVSEVDI  360
LDDGYRWRKY GQKVVKGNPN PRSYYKCTST GCPVRKHVER ASHDPKSVIT TYEGKHNHEV  420
PAARNAIHEM SAPPMKNVVH QINSNMPSSI GGMMRACEVR NFSNQYSQAA ETDNVSLDLG  480
VGISPNHSDA TNQMQSTGPD QMQYQMQPMA SMYSNMRHPS MAMPTVQGNS AGRMYGSRED  540
KGSEGFTFRA TPMDHSANLC YSGAGNLVMG P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37188422878Probable WRKY transcription factor 4
2lex_A5e-37188422878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654290.0EU665429.1 Triticum aestivum WRKY17 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176501.10.0WRKY transcription factor SUSIBA2
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A446KT400.0A0A446KT40_TRITD; Uncharacterized protein
STRINGTraes_2AS_C407071E4.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-101WRKY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]