PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_8132D23F4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 588aa    MW: 65237.8 Da    PI: 8.9481
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_8132D23F4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.8e-14150187240
                    TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            ++k+C+Ck+skClkkYCeCfa+g++C++ C+C++C N+ 
  Traes_2AS_8132D23F4.1 150 RRKQCKCKNSKCLKKYCECFASGRYCND-CNCKNCYNNV 187
                            579*************************.********96 PP
2TCR48.51.7e-15235275141
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                            k++kgC+Ck+s+ClkkYCeCf ++  Cse+CkC dCkN e+
  Traes_2AS_8132D23F4.1 235 KHTKGCHCKRSECLKKYCECFRSNILCSENCKCMDCKNYES 275
                            589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.7E-13149189IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.552150275IPR005172CRC domain
PfamPF036385.1E-10152186IPR005172CRC domain
SMARTSM011145.2E-18235276IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.7E-12238273IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MDNPLNLPPG SVQPNFGSAF YARKPGSAAT AVSLSQALPL WPPVPWPTLM VRKHHMPFPA  60
QPAAKKLQVR RSPVLSQDLP LREALQVAEL PPPRVQLRPL QQAPPVLKQS LPKTEVPVVL  120
PMRATSVDVR WNARYPWSET SCESTDRTSR RKQCKCKNSK CLKKYCECFA SGRYCNDCNC  180
KNCYNNVGHE AARQDAIDAA MERNPMAFMP KIGNIPPHAA QNCEFKVAEG PLVGKHTKGC  240
HCKRSECLKK YCECFRSNIL CSENCKCMDC KNYESNEDRK AIRRITRHQQ HLVYAHHMQN  300
PAIMGITGPY AALSPAAEKL SNLSVASSGR DQLISNNDSS QVTSSLLTPV PIEGTKSAVK  360
VEPHGVTYRP LLADVIQIEN VNELCKVLLL VSRQAAGASV GVKENINRRK IDRADSCLSS  420
INHDTEAVEK QRDEQVCLTE NSLTAVPVSE VRAGTPRYDP TNTCKYDRRP VSPETQELMC  480
NEQDRLFLTP SVAAVIPSAT KQRLPDTYKE QEKRILKTLH DYLGELVNCG RLHEEKLSLM  540
SSKFLHERTS VGSSCGSSSI SRVTEVARVG QTIRQSLHSP ASVKSPGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-261432862134Protein lin-54 homolog
5fd3_B9e-261432862134Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721950.0AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198634.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A3B6ASB70.0A0A3B6ASB7_WHEAT; Uncharacterized protein
STRINGTraes_2AS_8132D23F4.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138462025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.18e-73Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]