PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_5C7B75BC5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 320aa    MW: 35255.6 Da    PI: 7.1783
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_5C7B75BC5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.3e-35391312103
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d+ +++++sw e+  +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg
  Traes_2AS_5C7B75BC5.1  39 FLTKTYQLVDDPCTDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKG 117
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkkse 103
                             k+ll +i+r+ks+
  Traes_2AS_5C7B75BC5.1 118 AKHLLAEIHRRKSS 131
                            ***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-5735128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.3E-3736128IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.73E-3336128IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-193962IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.5E-3139128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-1990102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAFLVERCGE MVVSMEMGSG AAGAHGAGGV AGKPVPAPFL TKTYQLVDDP CTDHIVSWGE  60
DDATFVVWRP PEFARDLLPN YFKHNNFSSF VRQLNTYGFR KIVADRWEFA NEFFRKGAKH  120
LLAEIHRRKS SQPPPPSMVP HQAAYHHHYH LGNTFSPPPP PPPAAHHHHH PVYQHFQEEP  180
AAAATSHGGG NGGGDFLAAL SEDNRQLRRR NSLLLSELAH MKKLYNDIIY FLQNHVAPVT  240
SPSSAALQRH PPLPGAGAGV AASNSCRLLE LDMDVDRDSP AAEEDDTVKL FGVALHHGKK  300
KRAHREERGD VVAHDLGSEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A5e-22321281106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A5e-22321281106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085500.0KF208550.1 Triticum aestivum heat shock factor B4a (HsfB4a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186930.10.0heat stress transcription factor B-4b-like
SwissprotQ7XHZ01e-125HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A3B6AUZ40.0A0A3B6AUZ4_WHEAT; Uncharacterized protein
TrEMBLA0A446KQ990.0A0A446KQ99_TRITD; Uncharacterized protein
STRINGTraes_2AS_5C7B75BC5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-77heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]