PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_FC6DD1383.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 22269.9 Da PI: 10.4395 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.8e-18 | 24 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +g r++lg+++t eAa+a+++a+ ++g Traes_2AL_FC6DD1383.1 24 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDTSVEAARAYDRAAFGMRG 74 8********.**********96554..**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.4E-32 | 23 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.644 | 24 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.24E-28 | 24 | 83 | No hit | No description |
Pfam | PF00847 | 1.8E-13 | 24 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-35 | 24 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-22 | 24 | 83 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.9E-10 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
GTFRWVGTAA AAAPAPAPVE DLRKYRGVRQ RPWGKYAAEI RDPKRRGSRV WLGTYDTSVE 60 AARAYDRAAF GMRGAKAILN FPNEVGTRGA ELWAPPPSGP ASQTAGATNK RKRSQDEDAD 120 VEVTGVVINK AVKAEAPSPS SARVSWDTPS SVSRGTASST VTSVATTSEG GFPRTPSSSG 180 LEYWEALMGG MPLLSPLSPH PALGFPQLSV S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-27 | 24 | 84 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373575 | 0.0 | AK373575.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035F11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151127.1 | 1e-123 | ethylene-responsive transcription factor ERF105-like | ||||
TrEMBL | A0A3B6B4S7 | 1e-146 | A0A3B6B4S7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446LD76 | 1e-146 | A0A446LD76_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_FC6DD1383.1 | 1e-148 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 2e-34 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
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