PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Traes_2AL_D6F52AD28.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 211aa MW: 23374.4 Da PI: 10.2723

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_D6F52AD28.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.8	3.2e-35	48	106	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++l+cprC st+tkfCyynnys++qPr++C++CrryWt+GG+lr vPvGg++r+ Traes_2AL_D6F52AD28.2 48 QQQKLECPRCSSTDTKFCYYNNYSTTQPRHYCRTCRRYWTHGGTLRKVPVGGACRRGSG 106 7899***************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.2E-31	50	104	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-20	52	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.447	52	106	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	54	90	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MAPASASLLP AASAKRPFAP DSATDAAEKE QPLDQESAVT KKNGQNQQQQ KLECPRCSST 60 DTKFCYYNNY STTQPRHYCR TCRRYWTHGG TLRKVPVGGA CRRGSGSSSK RRRSFAEPHT 120 PSSGSPPPPQ PKQQDTLXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXSPPPAL GTTSAASCSP ARRLLGTDQR H

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371500	1e-126	AK371500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2135N06.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186822.1	5e-65	dof zinc finger protein DOF1.7-like
TrEMBL	A0A3B6B9L6	2e-91	A0A3B6B9L6_WHEAT; Uncharacterized protein
STRING	Traes_2AL_D6F52AD28.2	1e-107	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	5e-26	DNA binding with one finger 2.4

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]