PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 24308.3 Da PI: 8.754

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_CC3E5591E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.9	6.3e-17	58	111	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq e Le F+++r++ + ++ LA++lgL+ +qV vWFq rRa++k Traes_2AL_CC3E5591E.1 58 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQYRRARHK 111 45689***********************************************99 PP
2	HD-ZIP_I/II	110	1.6e-35	58	149	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrl++eq+++LE sF+ee+kLe+ rKv la eLgl+p+qvavWFq rRAR+k+k lE+++++Lk+a+da ++++Le+ev +L+e Traes_2AL_CC3E5591E.1 58 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQYRRARHKSKTLEQEFARLKHAHDAAILHKCHLENEVLRLKE 145 9**************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 +l++ Traes_2AL_CC3E5591E.1 146 KLRA 149 9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.17E-15	47	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.787	53	113	IPR001356	Homeobox domain
SMART	SM00389	3.1E-13	56	117	IPR001356	Homeobox domain
CDD	cd00086	9.56E-13	58	113	No hit	No description
Pfam	PF00046	2.3E-14	58	111	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-15	60	118	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MDNQQLFGSS YVDTPFFAAN GTAQRESQPK ARRRRRRAAR CGGGDGNGWE MDGGGDPKKR 60 RLTDEQAEML ELSFREERKL ETGRKVYLAA ELGLDPKQVA VWFQYRRARH KSKTLEQEFA 120 RLKHAHDAAI LHKCHLENEV LRLKEKLRAT AEEVQRLRSA AGIHADGGDS AGAVSVCGGS 180 PRSSFSTGTC QQHPGFSGAD VLGRDDDLMM CVPEWFFA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	39	RRRRRRAAR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB259783	0.0	AB259783.1 Hordeum vulgare subsp. vulgare Vrs1 mRNA for homeodomain leucine zipper protein Vrs1, complete cds, allele: Vrs1.b.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176255.1	1e-126	homeobox-leucine zipper protein HOX14-like
Swissprot	A2YN17	1e-67	HOX14_ORYSI; Homeobox-leucine zipper protein HOX14
Swissprot	Q7XI85	9e-68	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	A0A3B6U951	1e-160	A0A3B6U951_WHEAT; Uncharacterized protein
TrEMBL	A0A446LAW6	1e-160	A0A446LAW6_TRITD; Uncharacterized protein
STRING	Traes_2AL_CC3E5591E.1	1e-161	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-37	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]