PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_BF4D53AA5.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WOX | ||||||||
Protein Properties | Length: 194aa MW: 21066.8 Da PI: 9.7063 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.5e-20 | 53 | 112 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++++eq+++Le+l++ r+p+ +++e+++++l +++ ++V++WFqN++a+e++ Traes_2AL_BF4D53AA5.1 53 TRWNPSAEQIKVLEALYRGgMRTPNSAQIERITEELgrhgRIEGKNVFYWFQNHKARERQ 112 8*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.4 | 2.8e-37 | 52 | 114 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +tRW+P++eQik+Le+ly+ G+rtPn+++i+rit+eL ++G+ie+kNVfyWFQN+kaRerqkq Traes_2AL_BF4D53AA5.1 52 TTRWNPSAEQIKVLEALYRGGMRTPNSAQIERITEELGRHGRIEGKNVFYWFQNHKARERQKQ 114 69***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 4.3E-8 | 50 | 117 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.29E-13 | 52 | 118 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-8 | 53 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.02E-6 | 53 | 114 | No hit | No description |
Pfam | PF00046 | 6.2E-18 | 53 | 112 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.155 | 58 | 113 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MPPAAGAQDL PPGPAEEARR AAGRPRPRVR NATKLLCCTV RNHTVQVPVG GTTRWNPSAE 60 QIKVLEALYR GGMRTPNSAQ IERITEELGR HGRIEGKNVF YWFQNHKARE RQKQKRAALL 120 TLSTLDSSSL PATATKDGAG DKKEACDDAV TSCKRQCRTW GDGHGDAAAE VAAEGCTENV 180 TLELFPLRPQ GKAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL442007 | 1e-81 | AL442007.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence. | |||
GenBank | AL606635 | 1e-81 | AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence. | |||
GenBank | AL606692 | 1e-81 | AL606692.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence. | |||
GenBank | AP014960 | 1e-81 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-81 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | JF836159 | 1e-81 | JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161616.1 | 1e-109 | WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q25AM2 | 8e-84 | WOX4_ORYSI; WUSCHEL-related homeobox 4 | ||||
Swissprot | Q7XTV3 | 8e-84 | WOX4_ORYSJ; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A3B6B723 | 1e-120 | A0A3B6B723_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446LJY6 | 1e-120 | A0A446LJY6_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_BF4D53AA5.1 | 1e-141 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12692 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 1e-38 | WUSCHEL related homeobox 4 |
Publications ? help Back to Top | |||
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