PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_6B6086A7C.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 360aa    MW: 38546.5 Da    PI: 8.6615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_6B6086A7C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20161210255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Traes_2AL_6B6086A7C.2 161 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 210
                            7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.5E-33160219IPR001471AP2/ERF domain
SMARTSM003804.8E-38161224IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-22161219IPR016177DNA-binding domain
CDDcd000184.68E-30161219No hitNo description
PROSITE profilePS5103224.711161218IPR001471AP2/ERF domain
PfamPF008471.7E-13161210IPR001471AP2/ERF domain
PRINTSPR003671.7E-11162173IPR001471AP2/ERF domain
PRINTSPR003671.7E-11184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
LDLDPRRDER ERSGGRSTGR STKVDPRRHG KRPLPADEEE EQPPPPPSAA KHEQVEEQPY  60
HPLIARALQQ QGAASAGGSS GADVADPSPS PEAYAQYYYS ARADHDATAM VSALSHVIRA  120
TPEQQQAYYP AGSAAVSGEQ QHQHDAAAAA AIAEEQGRKR HYRGVRQRPW GKWAAEIRDP  180
KKAARVWLGT FDTAEDAAIA YDEAALRFKG TKAKLNFPER VQGRTDLGFV VTRGIPDRLQ  240
QQQHYPATVG APAMRPPPHQ TVVPYPDLMR YAQLLQGAGS AGGAVNLPFG AMSPPSMSSS  300
SPHILDFSTQ QLIRVSPASP AAAISSSGTT GPSTSSSTTT ASSPGAAWPY TGEHKNNKDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-26160222467ATERF1
3gcc_A1e-26160222467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3682540.0AK368254.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2070P06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191321.11e-144ethylene-responsive transcription factor ERF113-like
TrEMBLA0A3B6AZ900.0A0A3B6AZ90_WHEAT; Uncharacterized protein
TrEMBLA0A446L3310.0A0A446L331_TRITD; Uncharacterized protein
STRINGTraes_2AL_6B6086A7C.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-33ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]