PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_65586C538.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family S1Fa-like
Protein Properties Length: 96aa    MW: 10894.1 Da    PI: 10.5473
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_65586C538.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA132.51.1e-412896370
                   S1FA  3 vakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                           v ++e+ kGlnPG+ivllvv++ ll+f+vgny+ly yaqk+lPP+kkkPvskkklkreklkqGv++PGe
  Traes_2AL_65586C538.2 28 VIIEEVnKGLNPGMIVLLVVATTLLLFFVGNYALYLYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 96
                           5567778*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190135.0E-82896No hitNo description
PfamPF046897.1E-393296IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MHLRLFCFHI SMYVIASDRS SLYLQNNVII EEVNKGLNPG MIVLLVVATT LLLFFVGNYA  60
LYLYAQKTLP PKKKKPVSKK KLKREKLKQG VSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631141e-121AK363114.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2012N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159184.12e-43DNA-binding protein S1FA2
RefseqXP_020159185.12e-43DNA-binding protein S1FA2
SwissprotQ7XLX61e-25S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A446L3H26e-63A0A446L3H2_TRITD; Uncharacterized protein
STRINGTraes_2AL_65586C538.21e-63(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]