PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 312aa MW: 33632.1 Da PI: 7.1693

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_5BA7E2623.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.9	5.7e-14	42	92	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+ +++a+ k +g Traes_2AL_5BA7E2623.1 42 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARSYDRAAIKCNG 92 89******.7**5553..2.26********************99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.60E-25	42	102	No hit	No description
SuperFamily	SSF54171	1.11E-17	42	101	IPR016177	DNA-binding domain
Pfam	PF00847	4.5E-10	42	92	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-33	43	106	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.186	43	100	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-16	43	100	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEADINFSLE DYDDIKQMGN LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG 60 QFLGKKYVYL GLFDTEEEAA RSYDRAAIKC NGKDAVTNFD PSTYAEEFEP AASTGDAEQN 120 LDLSLGSSGG SNKRGSLDGG GGDDEGAAGS DQRVPMAFEL DWQTARSTKA KFDQNSTHRQ 180 MPPPALQASH MAFSPRQHQF MGSADPGTAG GLSLTVGAGA GGLAGHWPPH HQYQPPPPPQ 240 QQQRMHGWGN VVPGRSWQPP QPPPHHQAGP PPNNAAAAAA AAAASSRFPP YIAAQAQSWL 300 QKNGFHSLAR PT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269\|PubMed:22408071}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360149	0.0	AK360149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111J04.
GenBank	AK371953	0.0	AK371953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143N17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161606.1	1e-171	AP2-like ethylene-responsive transcription factor TOE3
Swissprot	B8AVJ9	1e-134	APL25_ORYSI; APETALA2-like protein 5
TrEMBL	M5AAY8	0.0	M5AAY8_9POAL; TaAP2-A
TrEMBL	M5AB35	0.0	M5AB35_WHEAT; TaAP2-A
TrEMBL	M5AB58	0.0	M5AB58_WHEAT; TaAP2-A
STRING	Traes_2AL_5BA7E2623.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5514	36	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.2	3e-65	AP2 family protein

Publications ? help Back to Top
Zhou Y, et al. Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1. Plant Cell, 2012. 24(3): p. 1034-48 [PMID:22408071] Ning S, et al. Structure, transcription and post-transcriptional regulation of the bread wheat orthologs of the barley cleistogamy gene Cly1. Theor. Appl. Genet., 2013. 126(5): p. 1273-83 [PMID:23381807]