PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2AL_450404EA6.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 307aa MW: 33541.3 Da PI: 5.9688

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AL_450404EA6.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.3	2.7e-29	4	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a ++ r+ +++sl+yeA+ r+ +P+yG+vg++++ Traes_2AL_450404EA6.1 4 SCNGCRVLRKGCSEDCSIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLINAGTDDSlRPGIFRSLLYEACGRIVNPIYGSVGLLWS 91 6**************************************************977666************************* PP DUF260 83 lqqqleqlkaelallkee 100 ++q++q+++e++l +++ Traes_2AL_450404EA6.1 92 NNWQMCQAAVEAVLSGKP 109 *********9987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	4.5E-87	1	295	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	16.445	3	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-23	4	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MRLSCNGCRV LRKGCSEDCS IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLINAGTDD 60 SLRPGIFRSL LYEACGRIVN PIYGSVGLLW SNNWQMCQAA VEAVLSGKPI VQVSSEDAAA 120 DRTPPLKAYD IRHVSTSPAA DGRLHKVAKP GRTRFKRASS ASSHHNPSSD SNNKPKPKPQ 180 PQTRAPTAEE ELDRQHRKEM EEGASQRAPS HESSDSRHED PVEPHCQQEA SADTEAEAGS 240 HVSQAEQEQE QSTEPAAEHA EEVEKEEDEE LALELTLGFA PVAVRPAGFH LSVRTAAEPA 300 FVGLRFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251426	0.0	AK251426.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf116o06, mRNA sequence.
GenBank	AK361913	0.0	AK361913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001D20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176408.1	0.0	LOB domain-containing protein 40-like
Swissprot	Q9M886	4e-78	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A3B6AY62	0.0	A0A3B6AY62_WHEAT; Uncharacterized protein
TrEMBL	A0A446L137	0.0	A0A446L137_TRITD; Uncharacterized protein
STRING	Traes_2AL_450404EA6.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-79	LOB domain-containing protein 41

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]