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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_409AB7647.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 733aa MW: 77333.8 Da PI: 6.8628 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 1e-30 | 294 | 350 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vk se+prsYY+Ct+++C+vkkkvers+ +++v+ei+Y+g+Hnh+ Traes_2AL_409AB7647.1 294 EDGYSWRKYGQKQVKHSEYPRSYYKCTHPSCQVKKKVERSH-EGHVTEIIYKGTHNHP 350 8****************************************.***************8 PP | |||||||
2 | WRKY | 104.7 | 5e-33 | 522 | 580 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe Traes_2AL_409AB7647.1 522 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 580 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-27 | 288 | 352 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-25 | 288 | 352 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.63 | 288 | 352 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-33 | 293 | 351 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-23 | 294 | 350 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.0E-37 | 507 | 582 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-29 | 514 | 582 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.539 | 517 | 582 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-38 | 522 | 581 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-25 | 523 | 580 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MDGHTHLAVE WKDQSPGADC SMLPSFLTDP FPADPLVEDC DGGNDGSEGA GFERHGLSVA 60 VGSPQEEGKP ATPHFGQRSS SSSSLSERMQ ARAGFSVAKL SMPGSEYSGA QSPYLTIPPG 120 LSPASLLESP VFLSNAMGQS SPTTGKLLML GDTNNNNNTR LEPPSIEDRP GAFSFKPLDL 180 KSSQYTAEGK KGSLPNSQHP SAPSRDVPVK TETNIQTTTR GAIPPGHLNQ AQFNNGQDLM 240 KCSYHDCNNK RNRLAADRTT AGGDNNDGPP VTAADSEAAK GDYPAAVATA APAEDGYSWR 300 KYGQKQVKHS EYPRSYYKCT HPSCQVKKKV ERSHEGHVTE IIYKGTHNHP RPAAQGRRPA 360 GGAQVHPFND AQMDAPADNN NNGYGNAGGS QPNAEARSLW HAGVAVQDWR GDGLEATSSP 420 SVPGELCDSS ASMQVHDGAA RFESPEGGVD VTSAVSDEVD GDDRVAHGSM SQGQGAADTT 480 EGDELESKRR KLESCAIDMS TASRAVREPR VVIQTTSEVD ILDDGYRWRK YGQKVVKGNP 540 NPRSYYKCTH PGCSVRKHVE RASHDLKSVI TTYEGKHNHE VPAARNGGHG SSAASGGTGA 600 SQLSHARRAE PPSVQDGLMR LGGCGAPFGL PPRDPLGPMS NYPYSLGGGH AXXLPMPSGL 660 GAVEGLKLPM LSPSLHSVFR QRQAMETAAG FRVPKGEVKD EAAGAGAGAG GGAAAAAAYP 720 QTMMSRLPLG HRM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-36 | 294 | 583 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-36 | 294 | 583 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376765 | 0.0 | AK376765.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3135C08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189258.1 | 0.0 | probable WRKY transcription factor 34 | ||||
TrEMBL | A0A3B6AZW4 | 0.0 | A0A3B6AZW4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446L6R4 | 0.0 | A0A446L6R4_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_409AB7647.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2075 | 38 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-106 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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