PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1DS_FE10585EC.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 366aa MW: 37594.8 Da PI: 8.2289

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1DS_FE10585EC.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.9	2e-37	93	152	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ lkcprCds+ntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+ Traes_1DS_FE10585EC.2 93 PEQGLKCPRCDSANTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 152 57899*************************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-37	77	151	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.9E-32	95	151	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	97	151	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	99	135	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MIFPPSFLDS SSWNDNQLDF EQHAHHQQVA AASCGGGAGD GGCNNHELLQ PSIMQQGTLA 60 EGGDGGGGGG QVVGPAKPMS MSERARLARV PLPEQGLKCP RCDSANTKFC YFNNYSLSQP 120 RHFCRACRRY WTRGGALRNV PVGGGYRRHA KRAKPKQAAA AAAAGAPAAN GAASGGSTTS 180 STTSACTTVS NPAPVLPAML QNGGGGNLSG LLPPLLRLAD FDAMSLGSTF SGMGKPSPVD 240 SAAGYYLGGG GGGAVAGLEQ WRVQQMQGFP FFQAMADQQH TLAPAAAPAM AMPGMFHYLG 300 LGNGGDGRGG HEDDGGDQQF HHAMPSKREG YPRSGSIAMY GGDHHLAAGA GYTSSYSNAA 360 TGNHLL

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MIFPPSFLDS SSWNDNQLDF EQHAHHQQVA AASCGGGAGD GGCNNHELLQ PSIMQQGTLA  60
EGGDGGGGGG QVVGPAKPMS MSERARLARV PLPEQGLKCP RCDSANTKFC YFNNYSLSQP  120
RHFCRACRRY WTRGGALRNV PVGGGYRRHA KRAKPKQAAA AAAAGAPAAN GAASGGSTTS  180
STTSACTTVS NPAPVLPAML QNGGGGNLSG LLPPLLRLAD FDAMSLGSTF SGMGKPSPVD  240
SAAGYYLGGG GGGAVAGLEQ WRVQQMQGFP FFQAMADQQH TLAPAAAPAM AMPGMFHYLG  300
LGNGGDGRGG HEDDGGDQQF HHAMPSKREG YPRSGSIAMY GGDHHLAAGA GYTSSYSNAA  360
TGNHLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM084353	0.0	AM084353.1 Hordeum vulgare subsp. vulgare dof5 gene for dof zinc finger protein 5, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167376.1	0.0	dof zinc finger protein DOF3.6-like isoform X1
TrEMBL	A0A3B5ZN43	0.0	A0A3B5ZN43_WHEAT; Uncharacterized protein
STRING	Traes_1DS_FE10585EC.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	1e-40	OBF-binding protein 3

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]