PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DS_4A2001BAC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 456aa    MW: 50424.8 Da    PI: 6.544
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DS_4A2001BAC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.33.9e-121302668126
                    NAM   8 hPtdeelvveyLkkkvegkk...lelee........vikevdiykvePwdLpkkvkaeekewyfFskrdkkya...tgkrknratksg 81 
                             Ptd elv++yL++ +++ +                 + + d+  + Pw+Lp ++    ++ y+ + +d  ++    g  ++  t  g
  Traes_1DS_4A2001BAC.1 130 TPTDVELVQDYLRPAIQRLPtkrS---LwdlcsgphPLVNPDLPFMGPWELPGMI---ARNKYYLTDHDALAScfeLGGFRELHTPYG 211
                            5*****************995540...24455555369999***********554...46789999999887744323344446899* PP

                    NAM  82 yWkatgkdkevlskkgel...........vglkktLvfykgrapkgektdWvmhey 126
                            +Wk + +d ++ ++++e+           vg+k+t+ f+   + +g +t+W+m+ y
  Traes_1DS_4A2001BAC.1 212 IWKVKTSDMAIRVQHNEVppvhihafnglVGVKRTMKFH-PYTYTGINTNWTMNVY 266
                            *************8666678888888899**********.678899*******988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.4E-23292IPR001623DnaJ domain
SuperFamilySSF465651.19E-25299IPR001623DnaJ domain
SMARTSM002711.3E-22563IPR001623DnaJ domain
PROSITE profilePS5007618.623671IPR001623DnaJ domain
CDDcd062571.62E-19760IPR001623DnaJ domain
PfamPF002269.3E-22768IPR001623DnaJ domain
PRINTSPR006251.1E-17826IPR001623DnaJ domain
PRINTSPR006251.1E-172641IPR001623DnaJ domain
PRINTSPR006251.1E-174363IPR001623DnaJ domain
PROSITE patternPS0063604867IPR018253DnaJ domain, conserved site
PRINTSPR006251.1E-176382IPR001623DnaJ domain
PROSITE profilePS5100514.573123286IPR003441NAC domain
SuperFamilySSF1019414.97E-14130285IPR003441NAC domain
PfamPF023651.2E-8130266IPR003441NAC domain
SMARTSM006144.2E-10391446IPR003656Zinc finger, BED-type
PROSITE profilePS5080810.915391448IPR003656Zinc finger, BED-type
SuperFamilySSF576673.93E-6394443No hitNo description
PfamPF028925.5E-5394439IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MVKDTAYYDT LGVSTDTSAA EMKKAYYVKA RWVHPDKNPG DPDAAREFQE LGEAYQVLCD  60
PVKRDSYDSS GKEGLSQDNM IDPAAVFSML FGRLNFEDYV GQLAALASAE AAGRKLEQDF  120
ELPDLTCTPT PTDVELVQDY LRPAIQRLPT KRSLWDLCSG PHPLVNPDLP FMGPWELPGM  180
IARNKYYLTD HDALASCFEL GGFRELHTPY GIWKVKTSDM AIRVQHNEVP PVHIHAFNGL  240
VGVKRTMKFH PYTYTGINTN WTMNVYFSLN GFTMDDGLVL CHVFETDSAP EYDDSPKCLG  300
CHPGACSGYH NGQAFGAPSN ASFNSTYLGS RPMHHHDTER RPDPRLSSFM AHLENLLLGD  360
PDPDNSADAG NSSARTGVPP TADHGQSKKR KKISDVWDYF TKIFACDING KVLTFAACNH  420
CCKVLTASSK GGTTHLARHA CPCKFKPVAA GRNVKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2och_A3e-16173473Hypothetical protein dnj-12
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387391KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149352.10.0uncharacterized protein LOC109734557 isoform X1
TrEMBLA0A3B5ZNU00.0A0A3B5ZNU0_WHEAT; Uncharacterized protein
TrEMBLM8CMX00.0M8CMX0_AEGTA; Chaperone protein dnaJ 10
STRINGEMT287870.0(Aegilops tauschii)
STRINGTraes_1DS_4A2001BAC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1859089
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.15e-07DNAJ heat shock N-terminal domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]