PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_CD3D9CDE7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 206aa    MW: 22160.2 Da    PI: 10.3985
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_CD3D9CDE7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.6e-1661109355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +grW++e+r+p   + r kr++lg+f+ a +Aa a+++a+ +++g
  Traes_1DL_CD3D9CDE7.1  61 YRGVRQRR-WGRWASEVREP---N-RgKRHWLGTFDNAVDAALAYDRAAVAIFG 109
                            9****998.*******9998...3.35*********************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.4360117IPR001471AP2/ERF domain
SMARTSM003801.4E-2860123IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2060118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-2860118IPR001471AP2/ERF domain
PRINTSPR003672.5E-116172IPR001471AP2/ERF domain
CDDcd000181.65E-2561117No hitNo description
PfamPF008471.5E-961105IPR001471AP2/ERF domain
PRINTSPR003672.5E-1199119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MPVEGAVGIK GEEMEQASAT TPTTSTIRTK RARPKSSATL KTPVAAPPGG EGGPEDRDHM  60
YRGVRQRRWG RWASEVREPN RGKRHWLGTF DNAVDAALAY DRAAVAIFGS RAIVNFPSAF  120
FISTAQPVQC HPASSSPSAA AASVFVEHKL RPMLAAASVL TEHGVKPMMA AASILDEHEV  180
KPVITASVFG EREVKPMVAA SVFRER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1861117663ATERF1
3gcc_A2e-1861117663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169668.11e-126dehydration-responsive element-binding protein 2D-like
TrEMBLA0A452ZC871e-146A0A452ZC87_AEGTS; Uncharacterized protein
STRINGTraes_1DL_CD3D9CDE7.11e-148(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-15ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]