PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DL_C5AF9D06A.1 | ||||||||
Common Name | YAB1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | YABBY | ||||||||
Protein Properties | Length: 115aa MW: 12787.5 Da PI: 10.774 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 135.7 | 5.7e-42 | 11 | 75 | 107 | 170 |
YABBY 107 eevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Traes_1DL_C5AF9D06A.1 11 EPSPRTNPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 75 5567877769*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.8E-39 | 13 | 75 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.41E-9 | 13 | 69 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 6.2E-5 | 24 | 67 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
PPVAGGKGGK EPSPRTNPVV NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP DISHREAFSA 60 AAKNWAHFPH IHFGLMPDHQ GLRKTSLLPQ DHQRKDGHGL LKEGLYAANM GIAPY |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY330228 | 0.0 | AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178920.1 | 4e-81 | protein YABBY 3-like | ||||
Swissprot | Q8L556 | 2e-63 | YAB3_ORYSJ; Protein YABBY 3 | ||||
TrEMBL | A0A3B5XZY0 | 1e-79 | A0A3B5XZY0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A3B5ZT37 | 9e-80 | A0A3B5ZT37_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446IWC0 | 8e-80 | A0A446IWC0_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A452YJ07 | 9e-80 | A0A452YJ07_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1DL_C5AF9D06A.1 | 3e-80 | (Triticum aestivum) | ||||
STRING | TRIUR3_27479-P1 | 5e-80 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-47 | YABBY family protein |
Publications ? help Back to Top | |||
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