PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_FBCD9C4B1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 64aa    MW: 7593.49 Da    PI: 4.7189
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_FBCD9C4B1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1318.1e-102564140
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40
                           +fYn+YA e GFsvrks+ +    n+ i+ r+ vCs +g+
  Traes_1BS_FBCD9C4B1.1 25 EFYNKYALEKGFSVRKSYVEWDGSNKYIILRKIVCSHQGF 64
                           6*************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-72564IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
ESDESMFEYL NVVSKMFDSE AEGYEFYNKY ALEKGFSVRK SYVEWDGSNK YIILRKIVCS  60
HQGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703066e-96HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188780.13e-36protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A453DSV92e-36A0A453DSV9_AEGTS; Uncharacterized protein
STRINGTraes_1BS_FBCD9C4B1.11e-39(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]