PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1BS_BA396392C.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 367aa MW: 37713 Da PI: 8.3997

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1BS_BA396392C.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.9	2e-37	94	153	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ lkcprCds+ntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+ Traes_1BS_BA396392C.2 94 PEQGLKCPRCDSANTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 153 57899*************************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-38	78	152	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.9E-32	96	152	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	98	152	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	100	136	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MIFPPSFLDS SSWNDNQLDF EQHAHHQQVA AASCGGGAGD GGCNNHELLQ PSIMQQGTLA 60 EGGDGGGGGG GQVVGPVKPM SMSERARLAR VPLPEQGLKC PRCDSANTKF CYFNNYSLSQ 120 PRHFCRACRR YWTRGGALRN VPVGGGYRRH AKRAKPKQAA AAAAAGPLAA NGAASGGSTT 180 SSTTSACTTM SNPAPVLPAM LQNGGGGNLS GLLPPLLRLA DFDAMSLGST FSGMGKPSAV 240 DSAAGYYLGG GGGGAVAGLE QWRVQQMQGF PFFQAMADQQ HTLGPAAAPA MAMPGMFHYL 300 GLGNGGDGRG GHEDDGGNQQ FHHAMPSKRE GYPRSGSIAM YGGDHHLAAG AGYTSSYSNA 360 ATGNHLL

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MIFPPSFLDS SSWNDNQLDF EQHAHHQQVA AASCGGGAGD GGCNNHELLQ PSIMQQGTLA  60
EGGDGGGGGG GQVVGPVKPM SMSERARLAR VPLPEQGLKC PRCDSANTKF CYFNNYSLSQ  120
PRHFCRACRR YWTRGGALRN VPVGGGYRRH AKRAKPKQAA AAAAAGPLAA NGAASGGSTT  180
SSTTSACTTM SNPAPVLPAM LQNGGGGNLS GLLPPLLRLA DFDAMSLGST FSGMGKPSAV  240
DSAAGYYLGG GGGGAVAGLE QWRVQQMQGF PFFQAMADQQ HTLGPAAAPA MAMPGMFHYL  300
GLGNGGDGRG GHEDDGGNQQ FHHAMPSKRE GYPRSGSIAM YGGDHHLAAG AGYTSSYSNA  360
ATGNHLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM084353	0.0	AM084353.1 Hordeum vulgare subsp. vulgare dof5 gene for dof zinc finger protein 5, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167376.1	1e-170	dof zinc finger protein DOF3.6-like isoform X1
TrEMBL	A0A3B5YR97	0.0	A0A3B5YR97_WHEAT; Uncharacterized protein
STRING	Traes_1BS_BA396392C.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	4e-40	OBF-binding protein 3

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]