PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1BS_BA396392C.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 367aa MW: 37713 Da PI: 8.3997 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.9 | 2e-37 | 94 | 153 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ lkcprCds+ntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+ Traes_1BS_BA396392C.2 94 PEQGLKCPRCDSANTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 153 57899*************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-38 | 78 | 152 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.9E-32 | 96 | 152 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.677 | 98 | 152 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 100 | 136 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 367 aa Download sequence Send to blast |
MIFPPSFLDS SSWNDNQLDF EQHAHHQQVA AASCGGGAGD GGCNNHELLQ PSIMQQGTLA 60 EGGDGGGGGG GQVVGPVKPM SMSERARLAR VPLPEQGLKC PRCDSANTKF CYFNNYSLSQ 120 PRHFCRACRR YWTRGGALRN VPVGGGYRRH AKRAKPKQAA AAAAAGPLAA NGAASGGSTT 180 SSTTSACTTM SNPAPVLPAM LQNGGGGNLS GLLPPLLRLA DFDAMSLGST FSGMGKPSAV 240 DSAAGYYLGG GGGGAVAGLE QWRVQQMQGF PFFQAMADQQ HTLGPAAAPA MAMPGMFHYL 300 GLGNGGDGRG GHEDDGGNQQ FHHAMPSKRE GYPRSGSIAM YGGDHHLAAG AGYTSSYSNA 360 ATGNHLL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM084353 | 0.0 | AM084353.1 Hordeum vulgare subsp. vulgare dof5 gene for dof zinc finger protein 5, exons 1-2. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167376.1 | 1e-170 | dof zinc finger protein DOF3.6-like isoform X1 | ||||
TrEMBL | A0A3B5YR97 | 0.0 | A0A3B5YR97_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1BS_BA396392C.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G55370.1 | 4e-40 | OBF-binding protein 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|