PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_80AF770971.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 193aa    MW: 22162.9 Da    PI: 6.5189
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_80AF770971.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-071421742153
                             HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                             k +yp++e++++L +++gL+ +q+ +WF N+R 
  Traes_1BS_80AF770971.1 142 KWPYPTEEDKARLVQEMGLQLTQINNWFINQRK 174
                             569****************************96 PP
2ELK30.29.8e-1196117122
                     ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                             ELKh+L+++Y+++L+++++E++
  Traes_1BS_80AF770971.1  96 ELKHELKQGYREKLVDIREEIL 117
                             9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012561.9E-13142IPR005541KNOX2
PfamPF037912.2E-12141IPR005541KNOX2
PROSITE profilePS5121310.19696116IPR005539ELK domain
PfamPF037891.5E-696117IPR005539ELK domain
SMARTSM011880.001496117IPR005539ELK domain
PROSITE profilePS5007111.11116179IPR001356Homeobox domain
SMARTSM003898.0E-9118183IPR001356Homeobox domain
SuperFamilySSF466893.04E-15118182IPR009057Homeodomain-like
CDDcd000861.78E-10119180No hitNo description
Gene3DG3DSA:1.10.10.601.1E-22123180IPR009057Homeodomain-like
PfamPF059204.4E-16136174IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTHYVLLLCS FKEQLQQHVR VHAMEAVMAC WELEQTLQSL TGASPGEGTG ATMSDDEDNP  60
VDSESNMFDG NDVSDGMGFG MLTEGERSLV ERVRQELKHE LKQGYREKLV DIREEILRKR  120
RAGKLPGDTA STLKAWWQAH AKWPYPTEED KARLVQEMGL QLTQINNWFI NQRKQNWHSN  180
PTSSSSDKSK RKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3539450.0AK353945.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1003P14.
GenBankAK3582110.0AK358211.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196997.11e-140homeobox protein knotted-1-like 11 isoform X2
SwissprotQ0E3C31e-125KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A3B5YUG21e-141A0A3B5YUG2_WHEAT; Uncharacterized protein
TrEMBLA0A3B5YV751e-143A0A3B5YV75_WHEAT; Uncharacterized protein
TrEMBLA0A446JPQ51e-143A0A446JPQ5_TRITD; Uncharacterized protein
TrEMBLA0A446JPQ71e-142A0A446JPQ7_TRITD; Uncharacterized protein
STRINGTraes_1BS_80AF77097.11e-143(Triticum aestivum)
STRINGTraes_1BS_80AF770971.11e-143(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-112KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]