PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BS_47D29F0A5.3
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 267aa    MW: 30369 Da    PI: 8.0526
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BS_47D29F0A5.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.82.6e-0757059126
                    NAM  59 yfFskrdkkyatgkrknratksgyWkatgk.dkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                            yf + + + ++  + +   t++g+W++     +++ ++ ++ vg+kkt+ f+   +++g kt+W m+ y
  Traes_1BS_47D29F0A5.3   5 YFLTDHTTVTSFHHFHGAPTTNGFWQQHPPhCTAIRAEFNRIVGIKKTMKFH---QHTGAKTNWSMNIY 70 
                            5555555555444444456889****8876256777778999**********...788999*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.997192IPR003441NAC domain
PfamPF023651.9E-4570IPR003441NAC domain
SuperFamilySSF1019415.75E-92391IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRDKYFLTDH TTVTSFHHFH GAPTTNGFWQ QHPPHCTAIR AEFNRIVGIK KTMKFHQHTG  60
AKTNWSMNIY YSWNEGDSFL RDDLVLCHVF ETDSPDYDDN PKCLGCHRGA CSGHPHDQAF  120
GAPSEDTSFK PIHYYPNRHS DPRLKSYMEQ LGNLLFSDAD PDNSADTGNC GAGRGKPPMA  180
DHGQSKKTQK DLRCLGLLHQ DICARHQREG RDICGLQPLL QDTVSQFQER DLTTCKARVP  240
VQVQTSSSWQ KCQGLRRRRQ CPIVLSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149352.17e-52uncharacterized protein LOC109734557 isoform X1
RefseqXP_020149353.13e-52uncharacterized protein LOC109734557 isoform X2
TrEMBLA0A446JFR01e-97A0A446JFR0_TRITD; Uncharacterized protein
STRINGTraes_1BS_47D29F0A5.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1859089
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]