 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Traes_1BS_1202C8C0D.2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family |
M-type_MADS |
Protein Properties |
Length: 150aa MW: 16579.5 Da PI: 10.3884 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Traes_1BS_1202C8C0D.2 | genome | IWGSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 98.9 | 2e-31 | 93 | 143 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyeys+
Traes_1BS_1202C8C0D.2 93 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYSN 143
79***********************************************95 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 150 aa
Download sequence Send
to blast |
MATTGWGNSR YARRGGDSAR GSGAYSLRKP QRERHHQGEE MDHSLSFPSY LQRRVQEVAA 60 QENPVKESAS PGSGSGSPGG AAEKMGRGRI EIKRIENTTN RQVTFCKRRN GLLKKAYELS 120 VLCDAEVALI VFSGRGRLYE YSNNRCSPLS
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 2e-20 | 85 | 144 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-20 | 85 | 144 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-20 | 85 | 144 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-20 | 85 | 144 | 1 | 60 | Myocyte-specific enhancer factor 2B |
5f28_A | 3e-20 | 85 | 142 | 1 | 58 | MEF2C |
5f28_B | 3e-20 | 85 | 142 | 1 | 58 | MEF2C |
5f28_C | 3e-20 | 85 | 142 | 1 | 58 | MEF2C |
5f28_D | 3e-20 | 85 | 142 | 1 | 58 | MEF2C |
6c9l_A | 2e-20 | 85 | 144 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-20 | 85 | 144 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-20 | 85 | 144 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-20 | 85 | 144 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-20 | 85 | 144 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-20 | 85 | 144 | 1 | 60 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AB084577 | 1e-133 | AB084577.1 Triticum aestivum WAG mRNA for MADS box transcription factor, complete cds. |