PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_A5A91DE10.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 814aa    MW: 86726 Da    PI: 6.5817
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_A5A91DE10.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix988.1e-3197181187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW++qe+laL+++r++m+ ++r++ lk+plWeevs+k++e+g++r++k+Ckek+en++k+yk++k+++ +r  ++ +t+++f+qlea
  Traes_1BL_A5A91DE10.1  97 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRNAKKCKEKFENVHKYYKRTKDSRAGR--NDGKTYRFFRQLEA 181
                            8********************************************************************97..56668*******85 PP

2trihelix108.73.8e-34497582187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+k ev+aLi++r++++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  Traes_1BL_A5A91DE10.1 497 RWPKTEVHALIQLRSNLDMRYQEAGPKGPLWEEISAGMRRMGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 582
                            8*********************************************************************8.99***********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01994156IPR001005SANT/Myb domain
PROSITE profilePS500906.56296154IPR017877Myb-like domain
CDDcd122035.62E-2896161No hitNo description
PfamPF138375.1E-2196182No hitNo description
SMARTSM007170.0016329556IPR001005SANT/Myb domain
PROSITE profilePS500907.41496554IPR017877Myb-like domain
PfamPF138372.3E-23496583No hitNo description
Gene3DG3DSA:1.10.10.609.7E-4496553IPR009057Homeodomain-like
CDDcd122034.65E-29497561No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MQQQQQPQHQ GGGRGQQFGL HTPEMPPFSP SRTTGQQRIS MAEAPSPISS RPPAPGPPPP  60
QQQQLNNELA GAGAVAFDEE ALAAGEEGLG GGAGGNRWPR QETLALLKIR SDMDAAFRDA  120
TLKGPLWEEV SRKLAEEGYR RNAKKCKEKF ENVHKYYKRT KDSRAGRNDG KTYRFFRQLE  180
AMQSTAAPTA SAPPPATAVG VPGVVVPTAV RPLAEPPPVG AAAAATAGLP TPVVVGNLSF  240
STSNTEEYSD EDDSDNEGTD DMGGGADERG KRKRTSEGGA AAGSGGDAGS GKMMRFFEGL  300
MKQVMERQEA MQQRFLEAIE KREQDRMIRE EAWRRQEMAR LAREQEILGQ ERAMAATRDA  360
AVLSFIQKIT GQTIPMPSIA AQAITFMPPP PPSQPHATPI AYSAAPVPAR PSSSQPPATH  420
SPPQPQPSPR QQKPPTMPPV TPQPHKSPAP ATPQLQQQAP VVNSSCMDIV VAPPSEAPHD  480
SSGYDGSGGG SGPASSRWPK TEVHALIQLR SNLDMRYQEA GPKGPLWEEI SAGMRRMGYN  540
RSSKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL EALYRNKAAL GSPSGGGGAL  600
ALPPPAEHAN AAPQERIEAF TVAAPISQTA PQQPPVAKND ASNAGNGNGN GGGVSAGVSG  660
GVQRLAASNG GSRFVFSEAG GDAAAKKPEG IMKETTMEQR QPQPQPQAAQ QAAINSYNRT  720
GGGGAESDNM DEDDEDEDDS EDEDEEDDLD GNKTQYKIQF QGQQQHQNQH QQHHHNVVRP  780
NATSSGGGNP PGAAAPSAPA AATTTAGSFL GMVQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3544260.0AK354426.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1007E05.
GenBankAK3615070.0AK361507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142F04.
GenBankAK3727130.0AK372713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010E21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191229.10.0trihelix transcription factor GTL1-like isoform X1
SwissprotQ391177e-66TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3B5YX130.0A0A3B5YX13_WHEAT; Uncharacterized protein
TrEMBLA0A446JWA00.0A0A446JWA0_TRITD; Uncharacterized protein
STRINGTraes_1BL_A5A91DE10.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-48Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]