PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_A5A91DE10.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Trihelix | ||||||||
Protein Properties | Length: 814aa MW: 86726 Da PI: 6.5817 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 98 | 8.1e-31 | 97 | 181 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWeevs+k++e+g++r++k+Ckek+en++k+yk++k+++ +r ++ +t+++f+qlea Traes_1BL_A5A91DE10.1 97 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEEVSRKLAEEGYRRNAKKCKEKFENVHKYYKRTKDSRAGR--NDGKTYRFFRQLEA 181 8********************************************************************97..56668*******85 PP | |||||||
2 | trihelix | 108.7 | 3.8e-34 | 497 | 582 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++ r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea Traes_1BL_A5A91DE10.1 497 RWPKTEVHALIQLRSNLDMRYQEAGPKGPLWEEISAGMRRMGYNRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 582 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.019 | 94 | 156 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.562 | 96 | 154 | IPR017877 | Myb-like domain |
CDD | cd12203 | 5.62E-28 | 96 | 161 | No hit | No description |
Pfam | PF13837 | 5.1E-21 | 96 | 182 | No hit | No description |
SMART | SM00717 | 0.0016 | 329 | 556 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.41 | 496 | 554 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.3E-23 | 496 | 583 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-4 | 496 | 553 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 4.65E-29 | 497 | 561 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 814 aa Download sequence Send to blast |
MQQQQQPQHQ GGGRGQQFGL HTPEMPPFSP SRTTGQQRIS MAEAPSPISS RPPAPGPPPP 60 QQQQLNNELA GAGAVAFDEE ALAAGEEGLG GGAGGNRWPR QETLALLKIR SDMDAAFRDA 120 TLKGPLWEEV SRKLAEEGYR RNAKKCKEKF ENVHKYYKRT KDSRAGRNDG KTYRFFRQLE 180 AMQSTAAPTA SAPPPATAVG VPGVVVPTAV RPLAEPPPVG AAAAATAGLP TPVVVGNLSF 240 STSNTEEYSD EDDSDNEGTD DMGGGADERG KRKRTSEGGA AAGSGGDAGS GKMMRFFEGL 300 MKQVMERQEA MQQRFLEAIE KREQDRMIRE EAWRRQEMAR LAREQEILGQ ERAMAATRDA 360 AVLSFIQKIT GQTIPMPSIA AQAITFMPPP PPSQPHATPI AYSAAPVPAR PSSSQPPATH 420 SPPQPQPSPR QQKPPTMPPV TPQPHKSPAP ATPQLQQQAP VVNSSCMDIV VAPPSEAPHD 480 SSGYDGSGGG SGPASSRWPK TEVHALIQLR SNLDMRYQEA GPKGPLWEEI SAGMRRMGYN 540 RSSKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL EALYRNKAAL GSPSGGGGAL 600 ALPPPAEHAN AAPQERIEAF TVAAPISQTA PQQPPVAKND ASNAGNGNGN GGGVSAGVSG 660 GVQRLAASNG GSRFVFSEAG GDAAAKKPEG IMKETTMEQR QPQPQPQAAQ QAAINSYNRT 720 GGGGAESDNM DEDDEDEDDS EDEDEEDDLD GNKTQYKIQF QGQQQHQNQH QQHHHNVVRP 780 NATSSGGGNP PGAAAPSAPA AATTTAGSFL GMVQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00243 | DAP | Transfer from AT1G76880 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354426 | 0.0 | AK354426.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1007E05. | |||
GenBank | AK361507 | 0.0 | AK361507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1142F04. | |||
GenBank | AK372713 | 0.0 | AK372713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3010E21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191229.1 | 0.0 | trihelix transcription factor GTL1-like isoform X1 | ||||
Swissprot | Q39117 | 7e-66 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A3B5YX13 | 0.0 | A0A3B5YX13_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446JWA0 | 0.0 | A0A446JWA0_TRITD; Uncharacterized protein | ||||
STRING | Traes_1BL_A5A91DE10.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-48 | Trihelix family protein |
Publications ? help Back to Top | |||
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