PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_80DD53F05.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CPP | ||||||||
Protein Properties | Length: 236aa MW: 26684.6 Da PI: 8.9693 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 25 | 3.7e-08 | 4 | 31 | 13 | 40 |
TCR 13 ClkkYCeCfaagkkCseeCkCedCkNke 40 C+ +YC Cfa g +Cse+C C C+Nk Traes_1BL_80DD53F05.2 4 CVCRYCPCFAGGGYCSEKCGCVPCFNKA 31 999***********************97 PP | |||||||
2 | TCR | 50.3 | 4.6e-16 | 79 | 115 | 3 | 39 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++gCnCkks+ClkkYC+C+++g+ Cs C+CedCkN Traes_1BL_80DD53F05.2 79 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCKNP 115 589*********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 25.727 | 1 | 117 | IPR005172 | CRC domain |
SMART | SM01114 | 0.0061 | 3 | 33 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 7.6E-5 | 4 | 30 | IPR005172 | CRC domain |
SMART | SM01114 | 6.5E-15 | 77 | 118 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.4E-11 | 80 | 114 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MIVCVCRYCP CFAGGGYCSE KCGCVPCFNK ADFAETVQTT RKVLLSRQKR MSLKINRRLE 60 ANAETMEDAH NSSSSTPPRR GCNCKKSSCL KKYCDCYQDG TGCSLFCRCE DCKNPYGKNE 120 GFMADESKRF IYTGADLDHS EDEHDFIVER SPRLQSPISK ESSFQHTPPR SKASSRDTHL 180 LPQVLSQWXX XXXXXXXXXX XXXXXXRTTR ARATSGSWRS TRSRRTPTAS RGASRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367866 | 0.0 | AK367866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2063M24. | |||
GenBank | AK374557 | 0.0 | AK374557.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069A23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157750.1 | 1e-134 | protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | T1LYG7 | 1e-135 | T1LYG7_TRIUA; Uncharacterized protein | ||||
STRING | Traes_1BL_80DD53F05.2 | 1e-157 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10159 | 29 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 5e-33 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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