PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_7AA5EFD05.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 788aa MW: 87457.2 Da PI: 4.8632 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5.1e-07 | 639 | 681 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+ + +l++++ +q+G++ ++ I + ++ +++ q++ ++ Traes_1BL_7AA5EFD05.2 639 RAKWTKSDTDLFYQGLRQFGSD-FAMIQQLFP-DKSRDQVRQKFK 681 569*******************.*********.********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.17E-9 | 631 | 686 | IPR009057 | Homeodomain-like |
Pfam | PF15963 | 8.9E-24 | 632 | 712 | No hit | No description |
PROSITE profile | PS51293 | 10.207 | 637 | 688 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-7 | 638 | 686 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-5 | 641 | 681 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence Send to blast |
MIDDEANFGD ITDAPAEAEA AVKFHPNKLR GKLRKKSVPS RSVVPNHTVE TSDEKAVALS 60 QDNLSQGLTT NQEITSSTVL GSETIGGAEA CGGTLYTPSD DVLTVSSVDR VSQDDDPHDD 120 PSEVATLQEN LVVSDTQASS THPTSKTVDD LADFGELFDT HSEEENVAKS KLKIKVKLSK 180 AASKSRKTGQ KKAASTVDVV SQNKEDGNDD LRGCNDEQVQ APRHEEHVQT SDSQPPLGTD 240 DGTVDNFVNH NRILEEPGPE ETAAKLRPKS QRKPGRASSK AVGTSDDHAE ANLKDINASV 300 DIDSEDGLIN PHTDDTQPIF GEPSAEAAAT FLLDLGKKKG KGKSVTFVLP DDYEGVAATD 360 TNHNDIHSDE NLNTLPQQAP QKHCLTEEHS DDQEYTDRES QYHEGERSDH GVEQQSKLDV 420 GKQELSMKLR SRTEIQKVGL SEHIVDDHLD EDFVEPSATE QNNDSGDENT AGGKQKAPRK 480 SRKKDPNKEP LRGSKRTSTK STSEKSQPNQ QKNKSEVSSR GRKRALKDTM TEQPEKKLTH 540 RIRQKRAQEV QTLLQKPDHE IDRMKLSVTH LRLLQEARER IQSKTPSGPS SSNQSSSHFG 600 DTDDFDPFGD NYDNDRTENH ALENATKLNY HSYMDKKTRA KWTKSDTDLF YQGLRQFGSD 660 FAMIQQLFPD KSRDQVRQKF KSEDKKHPMQ VHDAILHRSR DNLYLKQVMK QLNIEDSLKD 720 INSTQKQEVA STEGNTGNDV ISETNISVEN VSNLSDEEMG TLQSEVKEGE DVAAGNADDV 780 DLDVFDWY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371337 | 0.0 | AK371337.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2131E22. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182802.1 | 0.0 | uncharacterized protein LOC109768495 isoform X1 | ||||
Refseq | XP_020182803.1 | 0.0 | uncharacterized protein LOC109768495 isoform X1 | ||||
TrEMBL | A0A3B5Z0Y5 | 0.0 | A0A3B5Z0Y5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1BL_7AA5EFD05.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2595 | 29 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 3e-27 | MYB_related family protein |
Publications ? help Back to Top | |||
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