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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_5E492444E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9397.4 Da PI: 7.5204 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.8 | 3.2e-10 | 17 | 64 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W++ E + + +a + +G g W+++a+ mg ++++++++ ++q + Traes_1BL_5E492444E.1 17 EWSKKENKMFEEALAYYGEGapnLWEKVASAMGGTKSAEEVRRHFQVL 64 7*********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.946 | 10 | 65 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.0E-8 | 14 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.4E-12 | 16 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.8E-9 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.37E-6 | 17 | 65 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 17 | 71 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MSSGSSSRST SPSSGSEWSK KENKMFEEAL AYYGEGAPNL WEKVASAMGG TKSAEEVRRH 60 FQVLVDDISN IEYGRIPFPK YKTQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-21 | 14 | 85 | 7 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361203 | 1e-79 | AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176359.1 | 1e-44 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 8e-24 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A3B5Z4T7 | 3e-55 | A0A3B5Z4T7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446KCH6 | 3e-55 | A0A446KCH6_TRITD; Uncharacterized protein | ||||
STRING | Traes_1BL_5E492444E.1 | 3e-56 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-23 | RAD-like 1 |
Publications ? help Back to Top | |||
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