PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_546DFB91B.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 100aa MW: 11342.8 Da PI: 8.478 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 5 | 49 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+ +l+ +a + + + +W+ Iar +g g+++ +++ ++ Traes_1BL_546DFB91B.2 5 WTPKQNKLFEQALAVHDRDtpdRWHNIARAVGGGKSADDVRRYYE 49 *****************99************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.625 | 1 | 56 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-6 | 1 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.04E-11 | 4 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.8E-6 | 5 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-4 | 5 | 49 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.35E-6 | 5 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MSAGWTPKQN KLFEQALAVH DRDTPDRWHN IARAVGGGKS ADDVRRYYEL LVHDIARIEA 60 GKVPFPAYRP PCPGTGHNAS YEADRYDRHR CVSYQLCMGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-25 | 5 | 86 | 11 | 87 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951925 | 1e-115 | JF951925.1 Aegilops speltoides clone TaMYB42 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154620.1 | 1e-57 | protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 1e-26 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A453A0C8 | 4e-67 | A0A453A0C8_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1BL_546DFB91B.2 | 2e-70 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-29 | RAD-like 1 |
Publications ? help Back to Top | |||
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