PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_405FE0DBA.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 662aa MW: 74718 Da PI: 8.8026 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.5e-08 | 477 | 516 | 3 | 39 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 W +eE ell +a++++++g +W+ I++ +g+gR++ + Traes_1BL_405FE0DBA.2 477 EWGKEEVELLRKAIHKYPKGtnkRWEVISEFIGTGRSADE 516 7***********************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.287.110 | 9.4E-21 | 94 | 199 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 8.11E-20 | 95 | 176 | IPR001623 | DnaJ domain |
SMART | SM00271 | 1.7E-15 | 97 | 172 | IPR001623 | DnaJ domain |
CDD | cd06257 | 5.28E-13 | 98 | 169 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 6.5E-18 | 98 | 177 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.151 | 98 | 180 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.2E-8 | 103 | 121 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.2E-8 | 121 | 136 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.2E-8 | 152 | 172 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 157 | 176 | IPR018253 | DnaJ domain, conserved site |
PROSITE profile | PS50090 | 6.365 | 470 | 525 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-6 | 471 | 519 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.18E-8 | 472 | 518 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-6 | 474 | 527 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-7 | 476 | 517 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 5.8E-5 | 603 | 655 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.5E-6 | 604 | 648 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.18E-4 | 606 | 648 | No hit | No description |
PROSITE profile | PS50090 | 5.901 | 607 | 653 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MGSKRTCLLI TYSPEIVDGV PLYVSSNCLP VKASKYEPAG HSFHAVALKL RGLDEKEDTE 60 TDDRSVSSDD KSQDFSAGSD NFSSKGKKKS GSGSQQQDHY ALLGLGNLRF LATEDQIRKS 120 YRDMALKHHP DKQAALLLHE TTEAAKQAKK DEIESHFKAI QEAYEVLMDP TKRRIFDSTD 180 EFDDDIPTDC APQDFFKVFG PAFMRNGRWS VTQPIPSLGD DATPVVDVDQ FYNFWYNFKS 240 WREFPHEDEY DLEQAESREH KRWMERQNAK IQEKAKKVEY TRVRNLVDNA YRKDPRIQRR 300 KEQEKAEKQR RKEAKYMAKK LQEEEAARAA EEERKRKEEE AKIAAAAADI RKKLKEKEKK 360 LLRKEKNRLR ALVGQVIQES HFSLSKEDVE TVCTSHDFEQ LKKLCDIMED KDTAERARLL 420 RAALSKEENS SNTSQEEKIH ANGVADSTPK STVPQGTPKS TAPQVITLGN YEKKEKEWGK 480 EEVELLRKAI HKYPKGTNKR WEVISEFIGT GRSADEILKA TKTILLQKPD SAKAFDSFLE 540 KRKAAPSIVS PLSTRDETAG GSTVGTGTEP SKAAEQPAAS SSQAAKEKTG ADPVLEEAPS 600 ATDPDAWSEA QVLAVVQALK AFPKDANQRW ERVAAAVPGK TVVQCKKKIA SMRSNFRTKK 660 AE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5dje_A | 1e-18 | 194 | 298 | 20 | 124 | Zuotin |
5dje_B | 1e-18 | 194 | 298 | 20 | 124 | Zuotin |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 333 | 354 | RKRKEEEAKIAAAAADIRKKLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178667.1 | 0.0 | dnaJ homolog subfamily C member 2 | ||||
Refseq | XP_020178668.1 | 0.0 | dnaJ homolog subfamily C member 2 | ||||
Refseq | XP_020178669.1 | 0.0 | dnaJ homolog subfamily C member 2 | ||||
TrEMBL | A0A3B5Z627 | 0.0 | A0A3B5Z627_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446KDV5 | 0.0 | A0A446KDV5_TRITD; Uncharacterized protein | ||||
STRING | Traes_1BL_405FE0DBA.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8119 | 34 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06110.2 | 0.0 | DnaJ domain ;Myb-like DNA-binding domain |
Publications ? help Back to Top | |||
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