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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Traes_1BL_32F10AE2C.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family |
MYB_related |
Protein Properties |
Length: 372aa MW: 41893.4 Da PI: 9.7813 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Traes_1BL_32F10AE2C.1 | genome | IWGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 21.4 | 5.9e-07 | 63 | 105 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
W+ eE ++l ++++++ + + Ia ++++ R+ +++ksr+++
Traes_1BL_32F10AE2C.1 63 TWSREETDQLFELCQRFDLR-FIVIADRFPTARSVEDLKSRYYS 105
7*******************.*********************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 372 aa
Download sequence Send
to blast |
QVAWQWLPFT SSARTDNLQL YHWVRVVNNV PPTGDYDFAK YNTKVDVLKY TDEEYEKYLT 60 EPTWSREETD QLFELCQRFD LRFIVIADRF PTARSVEDLK SRYYSVTRAL LIARARSFDE 120 VAGNPLVKET FNAAHETERK RALSALFSQT KQQERKDAEV LAEAKRIMES RAANKNVEEA 180 GAPTSIPNAA VPADGVSPLS NNLPSSAATH PAAAANTSIP DTLRMLKVYL RTHALDQMVQ 240 AVTASAGIRM IKRVDQTLQD LGVNLKPKVP TKAVCAEHLE LRNEILTLLN IQKQLQNKEA 300 EVLANRESSF TEAPTTPKRS NRDIDRPFVP DMAGFGGERA VKRDHKRKAT GRFDAPPSPT 360 QGKRPRKMKA SD
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3hm5_A | 3e-19 | 35 | 115 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 3e-19 | 35 | 115 | 4 | 88 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK373872 | 0.0 | AK373872.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3046A24. |