PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_1E9F7A4EF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | YABBY | ||||||||
Protein Properties | Length: 98aa MW: 11086.7 Da PI: 9.7885 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 75.9 | 1.3e-23 | 22 | 58 | 134 | 170 |
YABBY 134 keeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++eiqrika+nPdishreafsaaaknWahfP+ihfgl Traes_1BL_1E9F7A4EF.1 22 RDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 58 68*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.4E-22 | 22 | 58 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
RIPFLLLFSS LWCFLGDGNA RRDEIQRIKA GNPDISHREA FSAAAKNWAH FPHIHFGLMP 60 DHQGLRKTSL LPQDHQRKDG HGLLKEGLYA ANMGIAPY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY330228 | 1e-124 | AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178920.1 | 4e-49 | protein YABBY 3-like | ||||
Swissprot | Q8L556 | 7e-42 | YAB3_ORYSJ; Protein YABBY 3 | ||||
TrEMBL | A0A452YJ09 | 8e-55 | A0A452YJ09_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1BL_1E9F7A4EF.1 | 2e-67 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 3e-32 | YABBY family protein |
Publications ? help Back to Top | |||
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