PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1BL_1E9F7A4EF.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

YABBY

Protein Properties

Length: 98aa MW: 11086.7 Da PI: 9.7885

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1BL_1E9F7A4EF.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	75.9	1.3e-23	22	58	134	170
YABBY 134 keeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++eiqrika+nPdishreafsaaaknWahfP+ihfgl Traes_1BL_1E9F7A4EF.1 22 RDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 58 68*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.4E-22	22	58	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
RIPFLLLFSS LWCFLGDGNA RRDEIQRIKA GNPDISHREA FSAAAKNWAH FPHIHFGLMP 60 DHQGLRKTSL LPQDHQRKDG HGLLKEGLYA ANMGIAPY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY330228	1e-124	AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178920.1	4e-49	protein YABBY 3-like
Swissprot	Q8L556	7e-42	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	A0A452YJ09	8e-55	A0A452YJ09_AEGTS; Uncharacterized protein
STRING	Traes_1BL_1E9F7A4EF.1	2e-67	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	3e-32	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]