PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_DC6B18EE0.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 176aa    MW: 19963.9 Da    PI: 9.3862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_DC6B18EE0.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004694116323
                            ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                            C+  +Cgk+F +   L++H  +H
  Traes_1AS_DC6B18EE0.1  94 CSydNCGKTFVDVAALRKHAHVH 116
                            88889**************9887 PP
2zf-C2H221.94.7e-07121145123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            y+C+   Cgk F ++s LkrH  tH
  Traes_1AS_DC6B18EE0.1 121 YVCQepGCGKKFVDSSKLKRHHLTH 145
                            99********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.5E-1388116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01492116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09492121IPR007087Zinc finger, C2H2
SuperFamilySSF576679.4E-693117No hitNo description
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.09E-10116162No hitNo description
Gene3DG3DSA:3.30.160.609.3E-14117141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.7E-4121145IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.129121150IPR007087Zinc finger, C2H2
PROSITE patternPS000280123145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-11142163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEYAAAGAGG YYYYPPAQQP QPPPQTLRRR PRPAARWVKQ WIPQDLASPG SKCALFKWVR  60
EDVYKNLKEN GGVGQEPEAQ PRKVEPATEI LFLCSYDNCG KTFVDVAALR KHAHVHGERQ  120
YVCQEPGCGK KFVDSSKLKR HHLTHTGQKD FVCPHPGCGK RFTFYYATIS CLHLCK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-2084166178PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591910.0AK359191.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091J18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180408.11e-116uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L32e-51YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A446II301e-128A0A446II30_TRITD; Uncharacterized protein
STRINGTraes_1AS_DC6B18EE0.11e-130(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.12e-50C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  4. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]