![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1AS_539232667.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 98aa MW: 11739.4 Da PI: 11.1575 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.2 | 1.4e-08 | 47 | 80 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Traes_1AS_539232667.1 47 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 80 569*****************************87 PP | |||||||
2 | ELK | 25.1 | 4e-09 | 1 | 19 | 1 | 19 |
ELK 1 ELKhqLlrKYsgyLgsLkq 19 ELKh+L+++Y+++L+++++ Traes_1AS_539232667.1 1 ELKHELKQGYREKLVDIRE 19 9****************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 9.132 | 1 | 21 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.7E-5 | 1 | 19 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 21 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-10 | 23 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-17 | 23 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.35E-8 | 24 | 85 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-25 | 28 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.6E-19 | 41 | 80 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 98 aa Download sequence Send to blast |
ELKHELKQGY REKLVDIREK MLRKRRAGKL PGDTASTLKA WWQAHAKWPY PTEEDKARLV 60 QETGLQLKQI NNWFINQRKR NWHSNPTSSS SDKSKRKR |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 77 | 97 | RKRNWHSNPTSSSSDKSKRKR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Isoform 3 acts as transcription activator, but isoforms 1 and 2 do not. {ECO:0000269|PubMed:7599652}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353945 | 1e-128 | AK353945.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1003P14. | |||
GenBank | AK358211 | 1e-128 | AK358211.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071D15. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659277.1 | 3e-60 | PREDICTED: homeobox protein knotted-1-like 13 isoform X2 | ||||
Refseq | XP_020081320.1 | 5e-60 | homeobox protein knotted-1-like 3 | ||||
Swissprot | Q0J6N4 | 2e-59 | KNOSD_ORYSJ; Homeobox protein knotted-1-like 13 | ||||
TrEMBL | A0A0P0XEB4 | 2e-59 | A0A0P0XEB4_ORYSJ; Os08g0292900 protein (Fragment) | ||||
TrEMBL | A0A446SUN4 | 2e-59 | A0A446SUN4_TRITD; Uncharacterized protein | ||||
TrEMBL | B8B9A9 | 3e-59 | B8B9A9_ORYSI; Uncharacterized protein | ||||
TrEMBL | B9G051 | 3e-59 | B9G051_ORYSJ; Uncharacterized protein | ||||
STRING | Traes_5BS_3B409615C.1 | 4e-66 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25220.2 | 2e-55 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|