PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AS_34B6145E5.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 783aa MW: 86347.1 Da PI: 6.8521 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.6e-09 | 468 | 510 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE e + + + +G++ +++I++ ++ ++t +c+++++k+ Traes_1AS_34B6145E5.3 468 PWTHEEKEVFMQMLASFGKN-FSKISNFLQ-HKTTADCVEFYYKH 510 8*****************99.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.83E-15 | 451 | 513 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 14.727 | 464 | 515 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-8 | 465 | 513 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-7 | 467 | 512 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.3E-7 | 467 | 510 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 10.718 | 675 | 722 | IPR017884 | SANT domain |
SMART | SM00717 | 2.5 | 676 | 724 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.09E-6 | 679 | 716 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00466 | 684 | 715 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 783 aa Download sequence Send to blast |
LLPSRLTAVP EDKSCELTTN TVTVSNKDIP GAEVQAYNDE IPIKLGQLDG DRIGSLANVL 60 AELLQHEDSC SGDSRRLTNS SKLLLLKENI ARELEKTELE IDLLECELKS VSTESENKAL 120 EDAQNPSPSS GTSKTLAKPA TSKVLAKPET SKVLAMPEIC GTSSSPKEQG VLTPCKLSVG 180 QEADANGVDL MDVVTAPVRS VTAVSSGESV ACPGVVAEAQ VAVAADVAPL KPSEGTGSEI 240 DAHCLTPEPG LSHDNVSSMK ADGSNALSTR QCSQHIDSHN LIPSIIAVNN DIAKEFNELV 300 FKPLPYGQPC LGLSSEMKND LSVRKKLGIH KNRLRFKEQA LTFKFKVLRH LWKEDVRLLS 360 VRKQRPKSNK RTDQSNRASQ SGSQRQRSSN RSRLGMPAGN LSTFPTTEIS DVANKMFTEF 420 QFKRCRNYLK MPALIIDEKE KESASFVSKN GLIEDPVSVE KERSVINPWT HEEKEVFMQM 480 LASFGKNFSK ISNFLQHKTT ADCVEFYYKH HKSDSFREVK KLLDLRQQQP TGNYLGTKSG 540 KKWNPENAAS LDMLGNAASV VAAHGLDYAN RVEKDTAKSI IRTSCRSDVS AVAKGSLDKD 600 GIANVSLHER ESVAADVLAG ICGTLSPEGM GSCITSSADH GQKIGATRME YLIATPEADK 660 SFDEEDDLSD QECEVDSVDW YDNEKSLFIE ALNNHGKDFA RISSYVKSKS YEQCKVMPVE 720 VGVILTRHVL LKWILLFVAH SLLWKWRWKF VLLLIKPFRG IFYLVSPLNS QKLIDQMGQI 780 LWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 8e-16 | 426 | 517 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 8e-16 | 426 | 517 | 4 | 94 | NUCLEAR RECEPTOR COREPRESSOR 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148930.1 | 0.0 | uncharacterized protein LOC109734119 | ||||
TrEMBL | A0A452XUW4 | 0.0 | A0A452XUW4_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1AS_34B6145E5.3 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6299 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-63 | MYB family protein |
Publications ? help Back to Top | |||
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