PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_3232D5589.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 78aa    MW: 8494.71 Da    PI: 10.1534
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_3232D5589.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.6e-28959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           +rien++ rqvtfskR+ g++KKA EL vLCda+vav++fs+tg+ly+ys+
  Traes_1AS_3232D5589.1  9 ERIENTTSRQVTFSKRKSGLFKKARELGVLCDAQVAVLLFSNTGRLYDYSN 59
                           69***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.931161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-33160IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-26323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-26361IPR002100Transcription factor, MADS-box
PfamPF003195.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MVRGKAVIER IENTTSRQVT FSKRKSGLFK KARELGVLCD AQVAVLLFSN TGRLYDYSNS  60
NSGYGAVYIS GPPSSCSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-15161161MEF2C
5f28_B4e-15161161MEF2C
5f28_C4e-15161161MEF2C
5f28_D4e-15161161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3714423e-58AK371442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2134C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165064.13e-35MADS-box transcription factor 23-like isoform X1
SwissprotQ9LT931e-25AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A446JIU12e-38A0A446JIU1_TRITD; Uncharacterized protein
STRINGTraes_1AS_3232D5589.12e-50(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.23e-28AGAMOUS-like 71
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]