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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AS_1432A2F79.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 123aa MW: 13730.3 Da PI: 9.9678 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.4 | 9.5e-31 | 35 | 93 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++dp++v++tY g Hnh Traes_1AS_1432A2F79.1 35 LDDGFKWRKYGKKAVKNSPNPRNYYRCSAEGCGVKKRVERDRDDPRYVVTTYDGVHNHA 93 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-32 | 23 | 95 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-28 | 27 | 95 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.582 | 30 | 95 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-35 | 35 | 94 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-24 | 36 | 92 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
GAGDDEHRGE KKIKISARVS SGRIGFRTRS EVEILDDGFK WRKYGKKAVK NSPNPRNYYR 60 CSAEGCGVKK RVERDRDDPR YVVTTYDGVH NHATPGAAAQ YYCYSPPRSS PPAAYSAAGL 120 LQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-29 | 20 | 95 | 2 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-29 | 20 | 95 | 2 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357196 | 1e-168 | AK357196.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048A03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169646.1 | 8e-84 | probable WRKY transcription factor 24 | ||||
Swissprot | Q8VWQ5 | 5e-40 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | A0A191XX76 | 2e-85 | A0A191XX76_WHEAT; WRKY transcription factor (Fragment) | ||||
TrEMBL | A0A3B5XXX8 | 5e-85 | A0A3B5XXX8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AS_1432A2F79.1 | 4e-86 | (Triticum aestivum) | ||||
STRING | TRIUR3_29978-P1 | 2e-85 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-42 | WRKY DNA-binding protein 50 |
Publications ? help Back to Top | |||
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