PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 161aa MW: 17281.7 Da PI: 7.2725

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AL_DB7593004.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140	7.7e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +Ca+Ck+lrr+C+kdC++ap fpa++p+kfa+vhk+FGasnv+k+l +lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ Traes_1AL_DB7593004.2 6 PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNVSKMLLELPVQQRGDAVSSLVYEANARVRDPVYGCVGAISFLQNQVS 93 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 ql+ +la++++e Traes_1AL_DB7593004.2 94 QLQMQLAVAQAE 105 ******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.096	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.7E-43	6	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MAGGSPCASC KLLRRRCTKD CIFAPFFPAD DPHKFAIVHK VFGASNVSKM LLELPVQQRG 60 DAVSSLVYEA NARVRDPVYG CVGAISFLQN QVSQLQMQLA VAQAEILCIQ MQQRDGCQSQ 120 DDAGRSDGHS LAAMQQMVVD DTAAAEAFLM QNGGGGASRR S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-48	4	107	9	112	LOB family transfactor Ramosa2.1
5ly0_B	7e-48	4	107	9	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146571.1	1e-110	LOB domain-containing protein 12
Swissprot	Q8LBW3	5e-71	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A287FUJ4	1e-109	A0A287FUJ4_HORVV; Uncharacterized protein
TrEMBL	A0A3B5Y1J0	1e-110	A0A3B5Y1J0_WHEAT; Uncharacterized protein
TrEMBL	A0A446J026	1e-110	A0A446J026_TRITD; Uncharacterized protein
STRING	Traes_1AL_DB7593004.2	1e-114	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-73	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]