PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_D36224AD9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 764aa MW: 82322.1 Da PI: 10.0074 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.7 | 2.6e-10 | 537 | 574 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++ LAk++gLt +qV++WF N R + Traes_1AL_D36224AD9.1 537 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 574 554459******************************88 PP | |||||||
2 | BELL | 84.9 | 9.7e-28 | 404 | 472 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +e q +k++L +l+eeV+krY+qy++qlq+vissFe+vagl +a+p++s+Al+++S+hF+ Lk i +q+ Traes_1AL_D36224AD9.1 404 AEQQWRKTRL-TLMEEVCKRYRQYYQQLQAVISSFETVAGLSNAAPFASIALRTMSKHFKYLKSTIQSQL 472 5789999997.788*****************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.9E-30 | 332 | 470 | IPR006563 | POX domain |
Pfam | PF07526 | 3.0E-34 | 337 | 468 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.455 | 515 | 578 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.98E-14 | 518 | 579 | No hit | No description |
SMART | SM00389 | 1.4E-11 | 518 | 582 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-17 | 520 | 585 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 521 | 582 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.2E-19 | 535 | 574 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
TTPGRQPGSP LALARVIHLV HPPPLPHSLT RTSRPDQHQL PFCLSLSLLT ISRRPPPSFA 60 SSSAAASLAA ARTFAEREKG KAPHPNPARR HHQKRTKAEG HQIRSADRAR GDEPLPVLPP 120 GQALAKCGSR CLLDLPSPFL SSTPPSLSLS LTLSRASSQV TELRRAASEA GRAELTYVRA 180 HVHGRAAAIA MSSAAGGYGG GAEHQHQHQQ HHQHQLLLGQ AAAGQLYHVP QHSRREKLRF 240 PPDPADSSSP TPGAWPPPTV PFYSYASSSS SYSPHSPTLA HAHNQLLVHG MPAGAQIPSQ 300 NFALSLSSSS SNPPPQQRRH LAGATGPYGP FTGYAAVLGR SRFLGPAQKL LEEICDVGGR 360 PSQLDRCSDD GLLDLDAMDA AGDVGHEMDS SDRAAAEGVT VSGAEQQWRK TRLTLMEEVC 420 KRYRQYYQQL QAVISSFETV AGLSNAAPFA SIALRTMSKH FKYLKSTIQS QLRNTSKVAA 480 GKDSLGKEDM ANFGIMGGGA ALMRGSNANT FSQPHNIWRP QRGLPERAVS VLRAWLFEHF 540 LHPYPTDSDK QMLAKQTGLT RNQVSNWFIN ARVRLWKPMV EEIHNLEMRQ GHKSSAADKN 600 QLGAQQQTQQ HSPDSSGRPS DPSNSQQGQS SSMSQGRGAH HHNASRHIQS ELSPMTHDMA 660 GQVSFAYNGG GMAAHHHGSM ALSHPQHVEG GAGSSGGVSL TLGLHQNNRA YIAEPLPAAL 720 PLNLAHRFGL EDVSDAYAMA ASFGGQDRHF TKEMGGHLLH DFVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-16 | 524 | 582 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-16 | 524 | 582 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB546646 | 0.0 | AB546646.1 Triticum aestivum WBLH3 mRNA for BEL1-type homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165654.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A3B5Y2S9 | 0.0 | A0A3B5Y2S9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AL_D36224AD9.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2528 | 38 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 3e-73 | TALE family protein |
Publications ? help Back to Top | |||
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