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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_B24F28600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 284aa MW: 30977.9 Da PI: 8.8441 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 65 | 1.2e-20 | 135 | 196 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.STTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.dpkvveitYegeHnhe 59 +Dg++WrKYG K++ ++ fprsYYrC ++ +Cp+kk v+++++ dp v+ +t ++H+++ Traes_1AL_B24F28600.1 135 NDGFHWRKYGEKKILNAVFPRSYYRCGYSdehRCPAKKLVQQQNNiDPPVFMVTLINDHTCS 196 7**************************998889*******987655**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-20 | 130 | 196 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-20 | 130 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.7E-29 | 134 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.848 | 135 | 193 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.0E-22 | 135 | 195 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MAMRPKSDMS PPPSDQRGAV IEELRKGAQL ADRLRQQLEL IPELGRRSAA LASVSNISTA 60 LVSSASMLES NREQYGCSSP DPGAAAYAAG ASGNGGGIGA RNGAIARTRK AKHRRGPHGE 120 ELPIKGRILT ETPENDGFHW RKYGEKKILN AVFPRSYYRC GYSDEHRCPA KKLVQQQNNI 180 DPPVFMVTLI NDHTCSSLFP ANDQPPSSSN SATVNSQVLD FTKASLSSAV GLSRLKKEED 240 AGMSVTVPSY TYEELASYSS LPLLSPKEWE MEMEIKSLFR HHSG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177383.1 | 1e-159 | WRKY transcription factor 55-like | ||||
TrEMBL | A0A3B5Y3H7 | 0.0 | A0A3B5Y3H7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446J637 | 0.0 | A0A446J637_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AL_B24F28600.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9993 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 3e-18 | WRKY family protein |
Publications ? help Back to Top | |||
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