PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_80D0BD0DC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 294aa    MW: 32640.5 Da    PI: 6.4255
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_80D0BD0DC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-056890123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C+ Cg+ F++   L  H+++H
  Traes_1AL_80D0BD0DC.1 68 YSCSFCGREFRSAQALGGHMNVH 90
                           99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-66594No hitNo description
Gene3DG3DSA:3.30.160.602.4E-46692IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.2176895IPR007087Zinc finger, C2H2
PfamPF139123.9E-66891IPR007087Zinc finger, C2H2
SMARTSM003550.0026890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDPAKYWMIT RRKQGDQKAP AVFSTPHVTV GSGGGTSSAT YYESWEERAF AQDSAGSLGG  60
CIWPPRSYSC SFCGREFRSA QALGGHMNVH RRDRARLKLS GMVEEGGGVD VHGMPLHQGY  120
MIQPLPCPPP RPSAPSTEAN PNSVRSFLSD PGRSLVDAAT ARTIWGKQVL AAPLVSPSDT  180
QDHGEKEVFL HDAEVRSEQE LRVGGGELKL GLLGRRTRSV FEDDKEDDER IVHLCRKRRR  240
IDLEATEFVL YSSSSEHLQR DDPRDDGDDD NRRVKVLKLC PSTPAEELDL ELRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-126390229superman protein
2l1o_A3e-126390229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235239RKRRR
2236240KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2494380.0AK249438.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf32c06, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201188.11e-174uncharacterized protein LOC109787040
TrEMBLA0A3B5Y3G50.0A0A3B5Y3G5_WHEAT; Uncharacterized protein
STRINGTraes_1AL_80D0BD0DC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.16e-26C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]